Co-expression analysis

Gene ID PtpAffx.209407.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g38970: zinc finger (C3HC4-type RING finger) family protein (HF=2e-39)
Module size 6 genes
NF 0.57
%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.209407.1.S1_atpmrna18634hypothetical protein-2e-39At2g38970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6086.00.93PtpAffx.206196.1.S1_atpmrna12304hypothetical protein-4e-19At2g19090unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.204628.1.S1_s_atpmrna9099hypothetical protein-3e+0At4g00232unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.55272.1.S1_atBP927962--5e-9At3g58050unknown proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.8434.1.A1_atCV268037hypothetical protein-4e-20At3g21600senescence/dehydration-associated protein-relatedO.I.H.G.S.X.
0.4067.00.92PtpAffx.56940.1.A1_atCV243741hypothetical protein-1e-2At5g62900unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.992.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1360.1.S1_at, orthologous to the query gene, PtpAffx.209407.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.2ZmAffx.1360.1.S1_atAt2g38970--1e+0At5g44650unknown proteinO.I.H.G.S.X.
0.8395.6Zm.15671.1.A1_atAt2g38970--4e-1At5g20630GER3 (GERMIN 3)O.I.H.G.S.X.
0.8094.0Zm.13916.1.S1_atAt2g38970peroxidase R15-6e-7At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.7792.1ZmAffx.172.1.A1_atAt2g38970--3e+0Atmg00240-O.I.H.G.S.X.
0.7188.2ZmAffx.147.1.S1_atAt2g38970Hypothetical protein LOC100192026-3e+0At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.6077.8Zm.4250.1.A1_atAt2g38970autophagy-related 3-8e-13At5g61500ATG3O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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