Co-expression analysis

Gene ID PtpAffx.209407.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g38970: zinc finger (C3HC4-type RING finger) family protein (HF=2e-39)
Module size 6 genes
NF 0.57
%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.209407.1.S1_atpmrna18634hypothetical protein-2e-39At2g38970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6086.00.93PtpAffx.206196.1.S1_atpmrna12304hypothetical protein-4e-19At2g19090unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.204628.1.S1_s_atpmrna9099hypothetical protein-3e+0At4g00232unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.55272.1.S1_atBP927962--5e-9At3g58050unknown proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.8434.1.A1_atCV268037hypothetical protein-4e-20At3g21600senescence/dehydration-associated protein-relatedO.I.H.G.S.X.
0.4067.00.92PtpAffx.56940.1.A1_atCV243741hypothetical protein-1e-2At5g62900unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.992.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.15389.1.S1_at, orthologous to the query gene, PtpAffx.209407.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9899.9Ta.15389.1.S1_atAt2g38970--1e+0At5g60710zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5273.7TaAffx.38087.1.A1_atAt2g38970--2e+0At1g33840unknown proteinO.I.H.G.S.X.
0.5173.0Ta.14469.3.S1_a_atAt2g38970MADS-box transcription factor TaAGL16-3e-5At3g61120AGL13 (AGAMOUS-LIKE 13)O.I.H.G.S.X.
0.5072.4Ta.4485.1.A1_atAt2g38970--1e+0At5g47240atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)O.I.H.G.S.X.
0.4969.7Ta.14469.2.A1_a_atAt2g38970MADS-box transcription factor TaAGL16-2e-5At3g61120AGL13 (AGAMOUS-LIKE 13)O.I.H.G.S.X.
0.4767.9Ta.6561.1.S1_atAt2g38970--8e-1At3g63250HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.4666.8Ta.13865.1.S1_atAt2g38970MADS box protein-3e-9At5g15800SEP1 (SEPALLATA1)O.I.H.G.S.X.
0.4565.2Ta.1316.1.S1_x_atAt2g38970--1e+1At5g33355-O.I.H.G.S.X.
0.4362.2TaAffx.38265.2.S1_atAt2g38970--5e+0At4g05380AAA-type ATPase family proteinO.I.H.G.S.X.
0.4362.2Ta.6561.2.S1_atAt2g38970--6e-1At3g63250HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.4362.2Ta.9527.1.S1_x_atAt2g38970--1e+1At5g44420PDF1.2O.I.H.G.S.X.
0.4058.4Ta.14029.1.S1_atAt2g38970--3e+0At3g01230unknown proteinO.I.H.G.S.X.
0.3854.7Ta.3361.2.S1_x_atAt2g38970Salt tolerant protein-2e+0At3g49305-O.I.H.G.S.X.
0.3753.0Ta.22785.1.S1_x_atAt2g38970--5e-3At4g19830immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.3753.0Ta.12700.1.S1_atAt2g38970MADS box transcription factor-3e-6At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.3651.9Ta.8726.1.S1_atAt2g38970--8e-1At3g47290phosphoinositide-specific phospholipase C family proteinO.I.H.G.S.X.
0.3651.9TaAffx.12850.2.S1_x_atAt2g38970--4e+0At2g24400auxin-responsive protein, putative / small auxin up RNA (SAUR_D)O.I.H.G.S.X.
0.3549.8Ta.4814.1.A1_atAt2g38970--5e-6At2g10560unknown proteinO.I.H.G.S.X.
0.3549.8Ta.4638.1.S1_atAt2g38970--4e-1At5g28630glycine-rich proteinO.I.H.G.S.X.
0.3448.1Ta.21020.1.S1_atAt2g38970--3e+0At3g57710protein kinase family proteinO.I.H.G.S.X.
0.3346.9TaAffx.19040.1.S1_atAt2g38970--2e+0At4g33660unknown proteinO.I.H.G.S.X.
0.3142.7Ta.8030.1.A1_atAt2g38970--3e-1At5g13090unknown proteinO.I.H.G.S.X.
0.3142.7Ta.5103.1.S1_atAt2g38970--1e-3At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.2939.2TaAffx.3910.2.A1_x_atAt2g38970--1e-1At3g57440unknown proteinO.I.H.G.S.X.
0.2735.6Ta.20658.1.S1_x_atAt2g38970--4e-1At3g06130heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2735.6Ta.2870.2.S1_atAt2g38970--3e-31At3g17820ATGSKB6O.I.H.G.S.X.
0.2633.6TaAffx.3910.2.A1_atAt2g38970--1e-1At3g57440unknown proteinO.I.H.G.S.X.
0.2532.1Ta.7431.1.A1_atAt2g38970--2e+0At2g45010unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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