Co-expression analysis

Gene ID	PtpAffx.209407.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g38970: zinc finger (C3HC4-type RING finger) family protein (HF=2e-39)
Module size	6 genes
NF	0.57
%ile	87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.94	PtpAffx.209407.1.S1_at	pmrna18634	hypothetical protein	-	2e-39	At2g38970	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.93	PtpAffx.206196.1.S1_at	pmrna12304	hypothetical protein	-	4e-19	At2g19090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.204628.1.S1_s_at	pmrna9099	hypothetical protein	-	3e+0	At4g00232	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.55272.1.S1_at	BP927962	-	-	5e-9	At3g58050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.8434.1.A1_at	CV268037	hypothetical protein	-	4e-20	At3g21600	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.56940.1.A1_at	CV243741	hypothetical protein	-	1e-2	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.2	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.9	96.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9	92.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the wheat gene, Ta.15389.1.S1_at, orthologous to the query gene, PtpAffx.209407.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	Ta.15389.1.S1_at	At2g38970	-	-	1e+0	At5g60710	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.38087.1.A1_at	At2g38970	-	-	2e+0	At1g33840	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.14469.3.S1_a_at	At2g38970	MADS-box transcription factor TaAGL16	-	3e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.4485.1.A1_at	At2g38970	-	-	1e+0	At5g47240	atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.14469.2.A1_a_at	At2g38970	MADS-box transcription factor TaAGL16	-	2e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.6561.1.S1_at	At2g38970	-	-	8e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.13865.1.S1_at	At2g38970	MADS box protein	-	3e-9	At5g15800	SEP1 (SEPALLATA1)	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.1316.1.S1_x_at	At2g38970	-	-	1e+1	At5g33355	-	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.38265.2.S1_at	At2g38970	-	-	5e+0	At4g05380	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.6561.2.S1_at	At2g38970	-	-	6e-1	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.9527.1.S1_x_at	At2g38970	-	-	1e+1	At5g44420	PDF1.2	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.14029.1.S1_at	At2g38970	-	-	3e+0	At3g01230	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.3361.2.S1_x_at	At2g38970	Salt tolerant protein	-	2e+0	At3g49305	-	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.22785.1.S1_x_at	At2g38970	-	-	5e-3	At4g19830	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.12700.1.S1_at	At2g38970	MADS box transcription factor	-	3e-6	At2g42830	SHP2 (SHATTERPROOF 2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.8726.1.S1_at	At2g38970	-	-	8e-1	At3g47290	phosphoinositide-specific phospholipase C family protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.12850.2.S1_x_at	At2g38970	-	-	4e+0	At2g24400	auxin-responsive protein, putative / small auxin up RNA (SAUR_D)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.4814.1.A1_at	At2g38970	-	-	5e-6	At2g10560	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.4638.1.S1_at	At2g38970	-	-	4e-1	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.21020.1.S1_at	At2g38970	-	-	3e+0	At3g57710	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.19040.1.S1_at	At2g38970	-	-	2e+0	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.8030.1.A1_at	At2g38970	-	-	3e-1	At5g13090	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.5103.1.S1_at	At2g38970	-	-	1e-3	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.3910.2.A1_x_at	At2g38970	-	-	1e-1	At3g57440	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.20658.1.S1_x_at	At2g38970	-	-	4e-1	At3g06130	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.2870.2.S1_at	At2g38970	-	-	3e-31	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.3910.2.A1_at	At2g38970	-	-	1e-1	At3g57440	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.7431.1.A1_at	At2g38970	-	-	2e+0	At2g45010	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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