CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.209407.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g38970: zinc finger (C3HC4-type RING finger) family protein (HF=2e-39)

Module size 6 genes

NF 0.57

%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.94 PtpAffx.209407.1.S1_at pmrna18634 hypothetical protein - 2e-39 At2g38970 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.60 86.0 0.93 PtpAffx.206196.1.S1_at pmrna12304 hypothetical protein - 4e-19 At2g19090 unknown protein O.I. H.G. S.X.
0.50 78.6 0.93 PtpAffx.204628.1.S1_s_at pmrna9099 hypothetical protein - 3e+0 At4g00232 unknown protein O.I. H.G. S.X.
0.50 78.6 0.93 PtpAffx.55272.1.S1_at BP927962 - - 5e-9 At3g58050 unknown protein O.I. H.G. S.X.
0.43 69.7 0.92 PtpAffx.8434.1.A1_at CV268037 hypothetical protein - 4e-20 At3g21600 senescence/dehydration-associated protein-related O.I. H.G. S.X.
0.40 67.0 0.92 PtpAffx.56940.1.A1_at CV243741 hypothetical protein - 1e-2 At5g62900 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.3 99.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.9 96.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.7 96.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.9 92.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g38970, orthologous to the query gene, PtpAffx.209407.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At2g38970 818482 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAV O.I. H.G. S.X.
0.25 22.6 At3g13222 820513 GIP1 (GBF-INTERACTING PROTEIN 1) Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root. O.I. H.G. S.X.
0.22 17.5 At2g39810 818568 HOS1 A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. O.I. H.G. S.X.
0.08 2.3 At3g44850 823619 protein kinase-related F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.04 0.9 At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV O.I. H.G. S.X.
0.01 0.2 At4g24490 828551 protein prenyltransferase F:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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