Co-expression analysis

Gene ID PtpAffx.209407.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g38970: zinc finger (C3HC4-type RING finger) family protein (HF=2e-39)
Module size 6 genes
NF 0.57
%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.94PtpAffx.209407.1.S1_atpmrna18634hypothetical protein-2e-39At2g38970zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6086.00.93PtpAffx.206196.1.S1_atpmrna12304hypothetical protein-4e-19At2g19090unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.204628.1.S1_s_atpmrna9099hypothetical protein-3e+0At4g00232unknown proteinO.I.H.G.S.X.
0.5078.60.93PtpAffx.55272.1.S1_atBP927962--5e-9At3g58050unknown proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.8434.1.A1_atCV268037hypothetical protein-4e-20At3g21600senescence/dehydration-associated protein-relatedO.I.H.G.S.X.
0.4067.00.92PtpAffx.56940.1.A1_atCV243741hypothetical protein-1e-2At5g62900unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.399.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.996.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.796.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.992.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g38970, orthologous to the query gene, PtpAffx.209407.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At2g38970818482zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MBOPFAVO.I.H.G.S.X.
0.2522.6At3g13222820513GIP1 (GBF-INTERACTING PROTEIN 1)Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root.O.I.H.G.S.X.
0.2217.5At2g39810818568HOS1A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress.O.I.H.G.S.X.
0.082.3At3g44850823619protein kinase-relatedF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.040.9At5g13260831167unknown proteinF:unknown;P:biological_process unknown;C:unknown;MFOPBAVO.I.H.G.S.X.
0.010.2At4g24490828551protein prenyltransferaseF:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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