Co-expression analysis

Gene ID PtpAffx.209366.1.S1_at
Gene name white-brown-complex ABC transporter family
Homology with ArabidopsisSimilar to At2g39350: ABC transporter family protein (HF=1e-18)
Module size 6 genes
NF 0.74
%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.93PtpAffx.209366.1.S1_atpmrna18547white-brown-complex ABC transporter family-1e-18At2g39350ABC transporter family proteinO.I.H.G.S.X.
0.7393.60.93PtpAffx.202912.1.S1_atpmrna5768hypothetical protein-6e-4At5g25460unknown proteinO.I.H.G.S.X.
0.7393.60.94PtpAffx.204494.1.S1_atpmrna8820hypothetical protein-3e-69At4g35190unknown proteinO.I.H.G.S.X.
0.5582.20.93PtpAffx.210399.1.S1_atpmrna20438hypothetical protein-5e-18At1g73680pathogen-responsive alpha-dioxygenase, putativeO.I.H.G.S.X.
0.5582.20.94Ptp.6783.1.S1_atDN488831hypothetical protein-1e-5At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.125359.1.S1_atDN491593f-box family protein-1e-7At1g28310Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.295.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.188.6GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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