Co-expression analysis

Gene ID	PtpAffx.209317.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g02030: RPL (REPLUMLESS) (HF=3e-14)
Module size	6 genes
NF	0.45
%ile	74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	97.0	0.83	PtpAffx.209317.1.S1_x_at	pmrna18410	hypothetical protein	-	3e-14	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.69108.1.S1_at	AJ767594	-	-	2e+1	At4g26810	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.91	PtpAffx.216824.1.S1_s_at	pmrna31860	hypothetical protein	-	4e-1	At5g05113	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	Ptp.5459.1.S1_at	CV257765	hypothetical protein	-	6e-74	At1g55490	CPN60B (CHAPERONIN 60 BETA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.49598.1.A1_s_at	CV278478	-	-	5e-3	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.94	PtpAffx.211673.1.S1_s_at	pmrna22881	hypothetical protein	-	1e-61	At4g01690	PPOX	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	97.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.7	94.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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