Co-expression analysis

Gene ID PtpAffx.209293.1.S1_s_at
Gene name fasciclin-like domain-containing protein
Homology with ArabidopsisSimilar to At3g55820: - (HF=8e-4)
Module size 11 genes
NF 0.24
%ile 43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6488.40.93PtpAffx.209293.1.S1_s_atpmrna18366fasciclin-like domain-containing protein-8e-4At3g55820-O.I.H.G.S.X.
0.5078.60.94PtpAffx.112917.2.A1_atCV271909ZIP transporter-4e-28At2g30080ZIP6O.I.H.G.S.X.
0.2747.10.94PtpAffx.159782.1.A1_atCV259240--5e+0At4g25590ADF7 (actin depolymerizing factor 7)O.I.H.G.S.X.
0.2645.20.94PtpAffx.158110.1.A1_s_atCV264939hypothetical protein-2e+0At3g51910AT-HSFA7AO.I.H.G.S.X.
0.2136.50.95Ptp.6631.1.S1_s_atCV243026thioredoxin h-5e-7At3g08710ATH9 (thioredoxin H-type 9)O.I.H.G.S.X.
0.2136.50.93PtpAffx.1567.1.A1_a_atCV243399hypothetical protein-5e-7At2g47210myb family transcription factorO.I.H.G.S.X.
0.1932.70.95PtpAffx.23817.1.S1_atCV264921hypothetical protein-6e-20At1g14650SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family proteinO.I.H.G.S.X.
0.1830.80.95PtpAffx.163033.1.S1_s_atCA923816hypothetical protein-8e-55At1g61150-O.I.H.G.S.X.
0.1729.10.95PtpAffx.87695.1.S1_atCV240625hypothetical protein-8e-15At1g26670VTI1BO.I.H.G.S.X.
0.1729.10.94PtpAffx.249.341.S1_atCN549778hypothetical protein-5e-19At2g24360serine/threonine/tyrosine kinase, putativeO.I.H.G.S.X.
0.1525.30.94Ptp.609.1.S1_s_atBU809511hypothetical protein-4e-54At5g09920NRPB4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.796.3GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.684.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.684.5GSM244441Mixed infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.482.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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