Co-expression analysis

Gene ID	PtpAffx.209236.1.S1_x_at
Gene name	AP2 domain-containing transcription factor
Homology with Arabidopsis	Similar to At5g65510: AIL7 (AINTEGUMENTA-like 7) (HF=2e-17)
Module size	16 genes
NF	0.40
%ile	68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	95.3	0.91	PtpAffx.209236.1.S1_x_at	pmrna18264	AP2 domain-containing transcription factor	-	2e-17	At5g65510	AIL7 (AINTEGUMENTA-like 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	Ptp.7103.1.S1_at	CV274394	hypothetical protein	-	2e+0	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.95	PtpAffx.19152.1.S1_at	CV274196	SAUR family protein	-	7e-1	At3g30768	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.95	PtpAffx.106173.1.S1_s_at	DN484577	hypothetical protein	-	5e+0	At5g45410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.94	Ptp.3711.1.S1_s_at	DN493224	hypothetical protein	-	3e-5	At1g11540	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	PtpAffx.201827.1.S1_s_at	pmrna3641	hypothetical protein	-	8e-3	At1g31130	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.94	PtpAffx.215737.1.S1_at	pmrna30101	ABC transporter family, retinal flippase subfamily	-	2e-18	At5g61730	ATATH11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.95	PtpAffx.202166.1.S1_at	pmrna4333	hypothetical protein	-	2e-12	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.94	Ptp.7167.1.S1_s_at	DN497975	hypothetical protein	-	2e-4	At3g49220	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.95	PtpAffx.68429.1.S1_a_at	DN493879	hypothetical protein	-	1e-8	At3g58710	WRKY69	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.94	PtpAffx.249.2.S1_at	D83226.1	hypothetical protein	-	5e-16	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.96	PtpAffx.144878.1.S1_at	BU885100	-	-	1e+0	At3g23180	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.93	Ptp.5748.1.S1_s_at	CX657082	hypothetical protein	-	3e-13	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.97	PtpAffx.211474.1.S1_at	pmrna22488	hypothetical protein	-	1e-5	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	PtpAffx.144878.1.S1_s_at	BU885100	hypothetical protein	-	1e+0	At3g23180	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.95	PtpAffx.86554.2.A1_at	BU837900	hypothetical protein	-	3e+0	At5g24250	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage