Co-expression analysis

Gene ID	PtpAffx.209197.1.S1_at
Gene name	ZIP transporter
Homology with Arabidopsis	Similar to At5g62160: AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) (HF=5e-1)
Module size	6 genes
NF	0.19
%ile	35.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.88	PtpAffx.209197.1.S1_at	pmrna18189	ZIP transporter	-	5e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.88	PtpAffx.203528.1.S1_at	pmrna7012	cytokinin oxidase	-	3e-28	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.89	PtpAffx.210754.1.S1_at	pmrna21099	hypothetical protein	-	4e-1	At2g19050	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.89	PtpAffx.207493.1.S1_at	pmrna14878	hypothetical protein	-	3e-5	At1g17750	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.89	PtpAffx.201655.1.S1_s_at	pmrna3288	GRAS family transcription factor /// GRAS family transcription factor	-	4e-4	At5g41920	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.88	Ptp.6639.1.S1_at	DN488065	hypothetical protein	-	2e-3	At5g54790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.2	99.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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