Co-expression analysis

Gene ID PtpAffx.209170.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g05560: 60S ribosomal protein L22-2 (RPL22B) (HF=4e-1)
Module size 6 genes
NF 0.34
%ile 58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.94PtpAffx.209170.1.S1_s_atpmrna18156hypothetical protein-4e-1At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.4471.90.96PtpAffx.126125.1.S1_s_atAI162512hypothetical protein-2e-12At1g29260PEX7O.I.H.G.S.X.
0.4268.60.95Ptp.1861.1.S1_x_atCN549959hypothetical protein-0At1g07930elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.3153.70.97PtpAffx.3788.3.S1_a_atBI139271hypothetical protein-3e+0At5g24410glucosamine/galactosamine-6-phosphate isomerase-relatedO.I.H.G.S.X.
0.2747.10.96PtpAffx.152437.4.S1_s_atBU824470hypothetical protein-4e-44At3g59920ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)O.I.H.G.S.X.
0.1321.60.95PtpAffx.200043.1.S1_atpmrna74hypothetical protein-1e-89At3g58570DEAD box RNA helicase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.894.9GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.293.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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