Co-expression analysis

Gene ID PtpAffx.209149.1.S1_x_at
Gene name pho1-like protein
Homology with ArabidopsisSimilar to At2g03240: - (HF=3e-16)
Module size 6 genes
NF 0.03
%ile 5.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.87PtpAffx.209149.1.S1_x_atpmrna18114pho1-like protein-3e-16At2g03240-O.I.H.G.S.X.
0.0812.90.92PtpAffx.115227.1.A1_atCV255521hypothetical protein-2e+0At2g20920unknown proteinO.I.H.G.S.X.
0.035.20.88PtpAffx.209371.1.S1_atpmrna18554hypothetical protein-4e+0At2g22670IAA8O.I.H.G.S.X.
0.023.60.92PtpAffx.32845.1.S1_atCK097658hypothetical protein-5e-61At2g2014026S protease regulatory complex subunit 4, putativeO.I.H.G.S.X.
0.012.20.92PtpAffx.18830.1.S1_atCV239939--8e-3At4g31340myosin heavy chain-relatedO.I.H.G.S.X.
0.012.20.92PtpAffx.43868.1.S1_atCV282588silencing group A protein-4e-45At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
5.396.9GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.596.1GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
4.596.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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