Co-expression analysis

Gene ID	PtpAffx.209072.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g67890: protein kinase family protein (HF=6e-64)
Module size	10 genes
NF	0.49
%ile	79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.95	PtpAffx.209072.1.S1_at	pmrna17945	hypothetical protein	-	6e-64	At1g67890	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.212690.1.S1_at	pmrna24814	hypothetical protein	-	4e-54	At3g18210	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	Ptp.3438.1.S1_at	CN519429	hypothetical protein	-	2e-13	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	Ptp.3743.1.S1_at	CX658671	hypothetical protein	-	7e-59	At4g33950	OST1 (OPEN STOMATA 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.23914.1.S1_at	DN490176	-	-	5e-1	At4g05632	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.31149.1.A1_at	CV243760	hypothetical protein	-	2e+0	At1g33811	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.158423.1.S1_at	CV239635	NAC domain protein, IPR003441	-	2e-7	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.96	PtpAffx.124599.1.S1_at	CV256317	hypothetical protein	-	5e-4	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.96	PtpAffx.217205.1.S1_at	pmrna32379	hypothetical protein	-	9e-2	At2g36720	PHD finger transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.96	PtpAffx.78558.1.A1_a_at	CV261976	hypothetical protein	-	4e-2	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	94.7	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7	85.5	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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