Co-expression analysis

Gene ID	PtpAffx.209028.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g72260: THI2.1 (THIONIN 2.1) (HF=8e-1)
Module size	6 genes
NF	0.34
%ile	60.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.90	PtpAffx.209028.1.S1_at	pmrna17878	hypothetical protein	-	8e-1	At1g72260	THI2.1 (THIONIN 2.1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.89	PtpAffx.208681.1.S1_at	pmrna17218	hypothetical protein	-	2e-3	At1g10710	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.212630.1.S1_s_at	pmrna24725	hypothetical protein	-	2e-2	At5g61930	APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.90	PtpAffx.249.292.A1_at	CV260437	hypothetical protein	-	3e-2	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.91	PtpAffx.42652.1.S1_at	CV268229	histone H3	-	1e-1	At1g01370	HTR12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.90	PtpAffx.221050.1.S1_x_at	pmrna37608	-	-	1e-1	At4g27590	copper-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.8	98.0	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.6	97.2	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
5.4	97.0	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.2	93.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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