Co-expression analysis

Gene ID PtpAffx.208983.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g68765: IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) (HF=3e-2)
Module size 6 genes
NF 0.37
%ile 63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7794.90.91PtpAffx.208983.1.S1_s_atpmrna17803hypothetical protein-3e-2At1g68765IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)O.I.H.G.S.X.
0.5078.60.91PtpAffx.208173.1.S1_x_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.5078.60.92PtpAffx.208173.1.S1_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.3661.60.92PtpAffx.54694.1.A1_atDN491842hypothetical protein-3e-11At3g10320transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.1729.10.92Ptp.8113.2.S1_a_atCV273417hypothetical protein-6e-9At1g55020LOX1O.I.H.G.S.X.
0.1729.10.91PtpAffx.209973.1.S1_atpmrna19675hypothetical protein-4e-2At5g35338-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.497.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.296.8GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.996.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.992.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.791.8GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.691.3GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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