Co-expression analysis

Gene ID PtpAffx.208921.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g06390: integral membrane family protein (HF=7e-2)
Module size 6 genes
NF 0.09
%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4268.60.81PtpAffx.208921.1.S1_atpmrna17689hypothetical protein-7e-2At3g06390integral membrane family proteinO.I.H.G.S.X.
0.3357.50.81PtpAffx.211622.1.S1_atpmrna22777--9e-6At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.3153.70.81PtpAffx.217704.1.S1_atpmrna33068hypothetical protein-3e-86Atcg01280-O.I.H.G.S.X.
0.2238.30.81PtpAffx.223761.1.S1_s_atpmrna41923hypothetical protein-2e-1At4g19110protein kinase, putativeO.I.H.G.S.X.
0.046.90.81PtpAffx.222555.1.S1_atpmrna40070hypothetical protein-2e+0At1g54740-O.I.H.G.S.X.
0.046.90.81PtpAffx.30879.1.A1_atCV258015hypothetical protein-4e-2At1g68070zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3357.50.78PtpAffx.208304.1.S1_a_atpmrna16517hypothetical protein-6e+0At1g31060unknown proteinO.I.H.G.S.X.
0.1830.80.78PtpAffx.99111.1.A1_atBI132075--8e-1At3g63290unknown proteinO.I.H.G.S.X.
0.1423.50.77PtpAffx.220554.1.S1_atpmrna36958hypothetical protein-3e-1At5g23840MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.1321.60.81PtpAffx.221706.1.S1_atpmrna38729hypothetical protein-1e+0At1g35400-O.I.H.G.S.X.
0.1321.60.84PtpAffx.26585.1.A1_atCV251018hypothetical protein-2e-6At5g48380leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.1219.60.83PtpAffx.224088.1.S1_s_atpmrna42325hypothetical protein-3e-1At1g10747-O.I.H.G.S.X.
0.1118.10.78PtpAffx.218251.1.S1_atpmrna33803hypothetical protein-2e+1At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.1016.30.77PtpAffx.214382.1.S1_atpmrna27988hypothetical protein-5e-1At3g22920peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.898.7GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
7.098.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.597.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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