Co-expression analysis

Gene ID PtpAffx.208892.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g71040: LPR2 (Low Phosphate Root2) (HF=6e-5)
Module size 7 genes
NF 0.40
%ile 68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.94PtpAffx.208892.1.S1_atpmrna17641hypothetical protein-6e-5At1g71040LPR2 (Low Phosphate Root2)O.I.H.G.S.X.
0.5683.90.96PtpAffx.126036.1.S1_atBP926823--8e-1At3g11020DREB2B (DRE/CRT-BINDING PROTEIN 2B)O.I.H.G.S.X.
0.5582.20.96PtpAffx.79084.1.S1_atBU889361hypothetical protein-2e-18At5g03880electron carrierO.I.H.G.S.X.
0.4067.00.95PtpAffx.139489.1.S1_s_atBU880707hypothetical protein-1e+0At1g53620unknown proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.10990.1.S1_atCV271402hypothetical protein-6e-82At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.2543.60.95PtpAffx.221342.1.S1_atpmrna38177hypothetical protein-1e-20At4g10000electron carrier/ protein disulfide oxidoreductaseO.I.H.G.S.X.
0.2238.30.95PtpAffx.120315.1.S1_atCX171118hypothetical protein-5e-16At3g30200-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8096.00.92PtpAffx.221011.1.S1_s_atpmrna37540hypothetical protein-4e-3At1g71040LPR2 (Low Phosphate Root2)O.I.H.G.S.X.
0.5078.60.90PtpAffx.11682.1.A1_atCN523252hypothetical protein-6e-19At1g55360unknown proteinO.I.H.G.S.X.
0.4875.40.90PtpAffx.201359.1.S1_atpmrna2695--4e+0At4g35725unknown proteinO.I.H.G.S.X.
0.4471.90.96PtpAffx.85882.1.S1_s_atCA925609hypothetical protein-2e-161At2g41220GLU2 (GLUTAMATE SYNTHASE 2)O.I.H.G.S.X.
0.4369.70.90PtpAffx.224762.1.S1_atpmrna43599hypothetical protein-2e-17At4g23220kinaseO.I.H.G.S.X.
0.4369.70.91PtpAffx.201359.1.S1_x_atpmrna2695hypothetical protein-4e+0At4g35725unknown proteinO.I.H.G.S.X.
0.4268.60.93PtpAffx.214451.1.S1_atpmrna28099hypothetical protein-2e-48At2g24120SCA3 (SCABRA 3)O.I.H.G.S.X.
0.4067.00.92PtpAffx.17334.1.S1_atAJ768027precursor of carboxylase p-protein 1, glycine decarboxylase complex-1e-26At4g33010AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1)O.I.H.G.S.X.
0.4067.00.94PtpAffx.127.1.S1_atCA930597hypothetical protein-2e-10At4g15920-O.I.H.G.S.X.
0.4067.00.96PtpAffx.55477.1.S1_s_atCX186924hypothetical protein-3e-51At3g24430HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101)O.I.H.G.S.X.
0.3661.60.88PtpAffx.218667.1.S1_atpmrna34370hypothetical protein-5e-1At1g76450oxygen-evolving complex-relatedO.I.H.G.S.X.
0.3357.50.91PtpAffx.207035.1.S1_atpmrna13941hypothetical protein-3e-3At5g53500WD-40 repeat family proteinO.I.H.G.S.X.
0.3357.50.93PtpAffx.53466.1.S1_atDN487053--8e-2At4g25170-O.I.H.G.S.X.
0.3357.50.93PtpAffx.145596.1.S1_atBP922801hypothetical protein-1e-34At5g05580FAD8 (FATTY ACID DESATURASE 8)O.I.H.G.S.X.
0.3357.50.95PtpAffx.4650.1.A1_x_atCV250105hypothetical protein-5e-4At2g29260tropinone reductase, putative / tropine dehydrogenase, putativeO.I.H.G.S.X.
0.3357.50.95PtpAffx.15492.1.S1_atDN492099light-harvesting complex II protein Lhcb7-5e-11At1g76570chlorophyll A-B binding family proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.381.3.A1_a_atBP928153--3e+0At2g26120glycine-rich proteinO.I.H.G.S.X.
0.3255.20.96PtpAffx.22483.1.S1_s_atDN499741hypothetical protein-4e-38At5g22800EMB1030 (EMBRYO DEFECTIVE 1030)O.I.H.G.S.X.
0.3153.70.93Ptp.3325.1.S1_atDN500008hypothetical protein-5e-13At3g13540ATMYB5 (MYB DOMAIN PROTEIN 5)O.I.H.G.S.X.
0.3153.70.96Ptp.7692.1.A1_atBP934366hypothetical protein-2e+0At5g06890-O.I.H.G.S.X.
0.3052.00.95PtpAffx.111558.1.S1_s_atCX179525hypothetical protein-6e-6At1g28140unknown proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.212971.1.S1_atpmrna25376hypothetical protein-4e-1At3g61220short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2950.50.88PtpAffx.18531.1.A1_atCV243468--2e+0At5g63905unknown proteinO.I.H.G.S.X.
0.2950.50.90Ptp.4050.4.A1_atCV282747--4e-23At2g21330fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.2950.50.92PtpAffx.203312.1.S1_atpmrna6574hypothetical protein-3e-7At4g24010ATCSLG1O.I.H.G.S.X.
0.2950.50.93Ptp.992.1.A1_atCV227704--6e-26At4g16390-O.I.H.G.S.X.
0.2747.10.90PtpAffx.208436.1.S1_atpmrna16762hypothetical protein-3e+0At5g52550unknown proteinO.I.H.G.S.X.
0.2747.10.91PtpAffx.224826.1.S1_atpmrna43698hypothetical protein-2e-3At1g56720protein kinase family proteinO.I.H.G.S.X.
0.2543.60.91PtpAffx.12330.1.A1_atCV231292hypothetical protein-7e+0At5g17140cysteine proteinase-relatedO.I.H.G.S.X.
0.2543.60.92PtpAffx.153917.1.A1_atCV237399formyltetrahydrofolate deformylase-6e-28At5g47435formyltetrahydrofolate deformylase, putativeO.I.H.G.S.X.
0.2543.60.93PtpAffx.201907.1.S1_atpmrna3800hypothetical protein-3e-49At1g78010tRNA modification GTPase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.594.3GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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