Co-expression analysis

Gene ID PtpAffx.208892.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g71040: LPR2 (Low Phosphate Root2) (HF=6e-5)
Module size 7 genes
NF 0.40
%ile 68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6086.00.94PtpAffx.208892.1.S1_atpmrna17641hypothetical protein-6e-5At1g71040LPR2 (Low Phosphate Root2)O.I.H.G.S.X.
0.5683.90.96PtpAffx.126036.1.S1_atBP926823--8e-1At3g11020DREB2B (DRE/CRT-BINDING PROTEIN 2B)O.I.H.G.S.X.
0.5582.20.96PtpAffx.79084.1.S1_atBU889361hypothetical protein-2e-18At5g03880electron carrierO.I.H.G.S.X.
0.4067.00.95PtpAffx.139489.1.S1_s_atBU880707hypothetical protein-1e+0At1g53620unknown proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.10990.1.S1_atCV271402hypothetical protein-6e-82At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.2543.60.95PtpAffx.221342.1.S1_atpmrna38177hypothetical protein-1e-20At4g10000electron carrier/ protein disulfide oxidoreductaseO.I.H.G.S.X.
0.2238.30.95PtpAffx.120315.1.S1_atCX171118hypothetical protein-5e-16At3g30200-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.395.8GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.594.3GSM372089Clone3200_LPI2_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.389.8GSM327397Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0127100, orthologous to the query gene, PtpAffx.208892.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3948.3Os01g0127100At1g71040-Conserved hypothetical protein3e+0At5g15254unknown proteinO.I.H.G.S.X.
0.6787.2Os04g0512800At1g71040--1e+1At5g22170unknown proteinO.I.H.G.S.X.
0.6787.2Os10g0424100At1g71040-BTB/POZ domain containing protein7e+0At3g24506unknown proteinO.I.H.G.S.X.
0.6382.7Os04g0472000At1g71040--5e+1At5g45490disease resistance protein-relatedO.I.H.G.S.X.
0.5978.0Os06g0480100At1g71040--2e+0At5g63130octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.H.G.S.X.
0.5777.0Os01g0371900At1g71040--1e+1At3g48570protein transport protein SEC61 gamma subunit, putativeO.I.H.G.S.X.
0.5371.3Os12g0473400At1g71040--2e+0At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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