Co-expression analysis

Gene ID	PtpAffx.208892.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g71040: LPR2 (Low Phosphate Root2) (HF=6e-5)
Module size	7 genes
NF	0.40
%ile	68.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	0.94	PtpAffx.208892.1.S1_at	pmrna17641	hypothetical protein	-	6e-5	At1g71040	LPR2 (Low Phosphate Root2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.96	PtpAffx.126036.1.S1_at	BP926823	-	-	8e-1	At3g11020	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.79084.1.S1_at	BU889361	hypothetical protein	-	2e-18	At5g03880	electron carrier	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.95	PtpAffx.139489.1.S1_s_at	BU880707	hypothetical protein	-	1e+0	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.95	PtpAffx.10990.1.S1_at	CV271402	hypothetical protein	-	6e-82	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.221342.1.S1_at	pmrna38177	hypothetical protein	-	1e-20	At4g10000	electron carrier/ protein disulfide oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.95	PtpAffx.120315.1.S1_at	CX171118	hypothetical protein	-	5e-16	At3g30200	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.5	94.3	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3	89.8	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the rice gene, Os01g0127100, orthologous to the query gene, PtpAffx.208892.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.39	48.3	Os01g0127100	At1g71040	-	Conserved hypothetical protein	3e+0	At5g15254	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os04g0512800	At1g71040	-	-	1e+1	At5g22170	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	Os10g0424100	At1g71040	-	BTB/POZ domain containing protein	7e+0	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.63	82.7	Os04g0472000	At1g71040	-	-	5e+1	At5g45490	disease resistance protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.59	78.0	Os06g0480100	At1g71040	-	-	2e+0	At5g63130	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	Os01g0371900	At1g71040	-	-	1e+1	At3g48570	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	Os12g0473400	At1g71040	-	-	2e+0	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Triticum_aestivum

Vitis_vinifera

Zea_mays

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