Co-expression analysis

Gene ID PtpAffx.208854.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g29160: SNF7.1 (HF=5e-3)
Module size 6 genes
NF 0.07
%ile 14.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.81PtpAffx.208854.1.S1_atpmrna17553hypothetical protein-5e-3At4g29160SNF7.1O.I.H.G.S.X.
0.3153.70.85PtpAffx.223882.1.S1_x_atpmrna42103hypothetical protein-3e+0At5g51080RNase H domain-containing proteinO.I.H.G.S.X.
0.2340.50.82PtpAffx.101361.1.S1_atCV267797--8e-1At5g63330-O.I.H.G.S.X.
0.1321.60.85PtpAffx.203084.1.S1_atpmrna6102hypothetical protein-5e-1At4g23350unknown proteinO.I.H.G.S.X.
0.0812.90.84PtpAffx.207126.1.S1_atpmrna14136hypothetical protein-4e+0At5g60130transcriptional factor B3 family proteinO.I.H.G.S.X.
0.012.20.81PtpAffx.215357.1.S1_atpmrna29498--1e-16Atcg00340-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.295.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM372097Clone3200_LPI5_N-_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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