Co-expression analysis

Gene ID PtpAffx.208807.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g26850: dehydration-responsive family protein (HF=9e-103)
Module size 7 genes
NF 0.17
%ile 32.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.88PtpAffx.208807.1.S1_atpmrna17463hypothetical protein-9e-103At1g26850dehydration-responsive family proteinO.I.H.G.S.X.
0.6388.10.90PtpAffx.208807.1.S1_x_atpmrna17463hypothetical protein-9e-103At1g26850dehydration-responsive family proteinO.I.H.G.S.X.
0.2136.50.92PtpAffx.374.8.S1_a_atCV226731hypothetical protein-6e-18At4g01710CRK (CROOKED)O.I.H.G.S.X.
0.2034.60.94PtpAffx.35695.1.A1_atCF228826hypothetical protein-3e-1At3g44935unknown proteinO.I.H.G.S.X.
0.1118.10.93Ptp.2828.1.A1_atCV243012hypothetical protein-9e-92At5g01020protein kinase family proteinO.I.H.G.S.X.
0.069.80.93Ptp.4906.1.S1_atBU809150SIN3 component, histone deacetylase complex /// SIN3 component, histone deacetylase complex-3e+0At5g19430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.058.30.92PtpAffx.6289.2.A1_atCV282867hypothetical protein-9e-12At1g74440unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.095.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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