Co-expression analysis

Gene ID	PtpAffx.208801.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g20220: zinc knuckle (CCHC-type) family protein (HF=3e-29)
Module size	6 genes
NF	0.35
%ile	61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	75.4	0.93	PtpAffx.208801.1.S1_at	pmrna17449	hypothetical protein	-	3e-29	At5g20220	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.93	PtpAffx.39391.1.S1_a_at	CX184051	hypothetical protein	-	1e-13	At5g67385	protein binding / signal transducer	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	PtpAffx.39391.1.S1_at	CX184051	hypothetical protein	-	1e-13	At5g67385	protein binding / signal transducer	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.93	Ptp.1212.1.S1_at	AJ774802	hypothetical protein	-	4e-1	At3g57190	peptide chain release factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.93	PtpAffx.17671.1.S1_at	CV277189	-	-	1e-7	At3g13810	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	Ptp.1834.1.A1_s_at	CV236415	hypothetical protein	-	3e-3	At1g25290	ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328063	Populus x canescens leaf control_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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