Co-expression analysis

Gene ID	PtpAffx.208727.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g13400: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.05
%ile	11.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.32	55.2	0.85	PtpAffx.208727.1.S1_at	pmrna17304	hypothetical protein	-	3e+0	At4g13400	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.85	PtpAffx.215438.1.S1_at	pmrna29629	fasciclin-like arabinogalactan protein	-	1e-1	At5g11740	AGP15 (ARABINOGALACTAN PROTEIN 15)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.85	PtpAffx.28042.1.S1_at	CK097820	-	-	2e+0	At2g19330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.86	PtpAffx.222883.1.S1_at	pmrna40590	hypothetical protein	-	5e+0	At5g62960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.86	PtpAffx.209820.1.S1_at	pmrna19361	hypothetical protein	-	2e-3	At5g55540	TRN1 (TORNADO 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.85	Ptp.1077.1.A1_at	CK090363	hypothetical protein	-	6e-1	At4g31510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
8.2	98.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.4	82.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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