Co-expression analysis

Gene ID	PtpAffx.208719.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g06620: 2-oxoglutarate-dependent dioxygenase, putative (HF=9e-9)
Module size	6 genes
NF	0.05
%ile	10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.85	PtpAffx.208719.1.S1_at	pmrna17289	hypothetical protein	-	9e-9	At1g06620	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.85	PtpAffx.24245.1.A1_at	CV267867	-	-	5e-1	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.82	PtpAffx.148122.1.S1_at	CX176412	hypothetical protein	-	6e-3	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.85	PtpAffx.52716.3.A1_at	CV259272	hypothetical protein	-	4e+0	At2g20605	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.89	Ptp.5049.2.S1_s_at	BU888047	hypothetical protein	-	5e+0	At5g59305	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.81	PtpAffx.18585.1.A1_at	CV241884	-	-	2e+0	At4g05230	ubiquitin family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.962.1.S1_at, orthologous to the query gene, PtpAffx.208719.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	ZmAffx.962.1.S1_at	At1g06620	-	-	3e-22	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.16173.1.A1_s_at	At1g06620	hypothetical protein LOC100192560	-	9e-2	At2g45250	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.3272.1.A1_at	At1g06620	deleted in split hand/splt foot protein 1	-	7e-3	At1g64750	ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I))	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.2003.1.S1_at	At1g06620	hypothetical protein LOC100276048	-	3e+0	At4g09840	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.13147.1.A1_at	At1g06620	hypothetical protein LOC100273613	-	1e+0	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.4803.1.S1_at	At1g06620	actin-7	-	1e-142	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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