Co-expression analysis

Gene ID PtpAffx.208719.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g06620: 2-oxoglutarate-dependent dioxygenase, putative (HF=9e-9)
Module size 6 genes
NF 0.05
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.85PtpAffx.208719.1.S1_atpmrna17289hypothetical protein-9e-9At1g066202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.1321.60.85PtpAffx.24245.1.A1_atCV267867--5e-1At3g215001-deoxy-D-xylulose-5-phosphate synthaseO.I.H.G.S.X.
0.1118.10.82PtpAffx.148122.1.S1_atCX176412hypothetical protein-6e-3At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.035.20.85PtpAffx.52716.3.A1_atCV259272hypothetical protein-4e+0At2g20605-O.I.H.G.S.X.
0.023.60.89Ptp.5049.2.S1_s_atBU888047hypothetical protein-5e+0At5g59305unknown proteinO.I.H.G.S.X.
0.023.60.81PtpAffx.18585.1.A1_atCV241884--2e+0At4g05230ubiquitin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6298.1.S1_at, orthologous to the query gene, PtpAffx.208719.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6081.0Ta.6298.1.S1_atAt1g06620--3e+0At5g19940plastid-lipid associated protein PAP-related / fibrillin-relatedO.I.H.G.S.X.
0.5072.4Ta.23990.1.A1_atAt1g06620--4e+0At3g11020DREB2B (DRE/CRT-BINDING PROTEIN 2B)O.I.H.G.S.X.
0.4260.9Ta.16566.1.S1_atAt1g06620--6e+0At5g60430antiporter/ drug transporterO.I.H.G.S.X.
0.3956.1Ta.6261.1.S1_atAt1g06620--1e-1At3g20890RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3753.0Ta.18983.1.S1_atAt1g06620--9e+0At1g18730NDF6 (NDH DEPENDENT FLOW 6)O.I.H.G.S.X.
0.3549.8Ta.19433.1.A1_atAt1g06620--3e-1At4g00820iqd17 (IQ-domain 17)O.I.H.G.S.X.
0.3346.9TaAffx.16068.1.S1_atAt1g06620--1e+0At1g33260protein kinase family proteinO.I.H.G.S.X.
0.3040.9Ta.18983.1.S1_x_atAt1g06620--9e+0At1g18730NDF6 (NDH DEPENDENT FLOW 6)O.I.H.G.S.X.
0.2735.6Ta.11336.1.A1_atAt1g06620--2e-1At5g44570unknown proteinO.I.H.G.S.X.
0.2735.6Ta.30534.1.S1_atAt1g06620--2e+0At2g20830folic acid binding / transferaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays



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