Co-expression analysis

Gene ID PtpAffx.208719.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g06620: 2-oxoglutarate-dependent dioxygenase, putative (HF=9e-9)
Module size 6 genes
NF 0.05
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.85PtpAffx.208719.1.S1_atpmrna17289hypothetical protein-9e-9At1g066202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.1321.60.85PtpAffx.24245.1.A1_atCV267867--5e-1At3g215001-deoxy-D-xylulose-5-phosphate synthaseO.I.H.G.S.X.
0.1118.10.82PtpAffx.148122.1.S1_atCX176412hypothetical protein-6e-3At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.035.20.85PtpAffx.52716.3.A1_atCV259272hypothetical protein-4e+0At2g20605-O.I.H.G.S.X.
0.023.60.89Ptp.5049.2.S1_s_atBU888047hypothetical protein-5e+0At5g59305unknown proteinO.I.H.G.S.X.
0.023.60.81PtpAffx.18585.1.A1_atCV241884--2e+0At4g05230ubiquitin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0540432, orthologous to the query gene, PtpAffx.208719.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.4Os07g0540432At1g06620--5e+0At5g44560VPS2.2O.I.H.G.S.X.
0.3948.3Os07g0239600At1g06620-Protein prenyltransferase domain containingprotein2e-6At5g05580FAD8 (FATTY ACID DESATURASE 8)O.I.H.G.S.X.
0.3948.3Os10g0500400At1g06620-GCN5-related N-acetyltransferase domain containingprotein3e-1At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.3948.3Os01g0858000At1g06620-HMG-I and HMG-Y, DNA-binding domain containingprotein7e-3At1g19485AT hook motif-containing proteinO.I.H.G.S.X.
0.3440.0Os10g0322300At1g06620-Hypothetical protein5e-1At5g35698-O.I.H.G.S.X.
0.3338.8Os10g0442700At1g06620--5e-4At5g03320protein kinase, putativeO.I.H.G.S.X.
0.3236.3Os01g0730900At1g06620-Replication factor C conserved region domaincontaining protein8e-11At4g18820ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.3134.5Os06g0341800At1g06620--9e-1At3g23245unknown proteinO.I.H.G.S.X.
0.2931.1Os03g0279100At1g06620--2e+0At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.2831.1Os02g0555100At1g06620-TPR-like domain containing protein6e-2At2g03420unknown proteinO.I.H.G.S.X.
0.2831.1Os01g0839000At1g06620--3e-1At2g26120glycine-rich proteinO.I.H.G.S.X.
0.2727.5Os12g0128800At1g06620-Arabinoxylan arabinofuranohydrolase isoenzymeAXAH-I1e-10At3g10740ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)O.I.H.G.S.X.
0.2727.5Os07g0513400At1g06620-Conserved hypothetical protein2e-1At4g35165unknown proteinO.I.H.G.S.X.
0.1712.6Os11g0208000At1g06620-Cyclin-like F-box domain containing protein4e-1At1g33640unknown proteinO.I.H.G.S.X.
0.1510.3Os12g0138100At1g06620-GRAS transcription factor domain containingprotein1e-12At1g77120ADH1 (ALCOHOL DEHYDROGENASE 1)O.I.H.G.S.X.
0.138.2Os03g0445900At1g06620--2e+0At1g51140basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.116.5Os11g0271000At1g06620-Hypothetical protein3e+0At1g16022unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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