Co-expression analysis

Gene ID PtpAffx.208719.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g06620: 2-oxoglutarate-dependent dioxygenase, putative (HF=9e-9)
Module size 6 genes
NF 0.05
%ile 10.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.85PtpAffx.208719.1.S1_atpmrna17289hypothetical protein-9e-9At1g066202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.1321.60.85PtpAffx.24245.1.A1_atCV267867--5e-1At3g215001-deoxy-D-xylulose-5-phosphate synthaseO.I.H.G.S.X.
0.1118.10.82PtpAffx.148122.1.S1_atCX176412hypothetical protein-6e-3At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.035.20.85PtpAffx.52716.3.A1_atCV259272hypothetical protein-4e+0At2g20605-O.I.H.G.S.X.
0.023.60.89Ptp.5049.2.S1_s_atBU888047hypothetical protein-5e+0At5g59305unknown proteinO.I.H.G.S.X.
0.023.60.81PtpAffx.18585.1.A1_atCV241884--2e+0At4g05230ubiquitin family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.490.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.188.6GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.55339.1.S1_at, orthologous to the query gene, PtpAffx.208719.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5979.5GmaAffx.55339.1.S1_atAt1g06620--5e-2At5g434502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.4766.6Gma.6955.1.A1_atAt1g06620--1e+0At5g55650unknown proteinO.I.H.G.S.X.
0.4158.1GmaAffx.83344.1.S1_atAt1g06620--7e-58At5g53170FTSH11 (FtsH protease 11)O.I.H.G.S.X.
0.3954.5GmaAffx.8607.1.S1_atAt1g06620--1e-26At1g66670CLPP3O.I.H.G.S.X.
0.3954.5GmaAffx.83112.2.S1_atAt1g06620--8e-8At2g04360unknown proteinO.I.H.G.S.X.
0.3853.3GmaAffx.78734.1.S1_atAt1g06620--1e-3At4g35760-O.I.H.G.S.X.
0.3447.2Gma.17968.1.S1_atAt1g06620--2e-8At2g04360unknown proteinO.I.H.G.S.X.
0.3447.2Gma.6377.1.S1_atAt1g06620--2e-1At1g52825unknown proteinO.I.H.G.S.X.
0.2939.0Gma.16538.1.S1_atAt1g06620--1e+0At5g03406ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.2839.0Gma.2022.1.S1_atAt1g06620--2e-7At5g434502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.2735.7GmaAffx.31318.1.S1_atAt1g06620--2e-6At3g47490HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.2532.6Gma.13261.2.A1_a_atAt1g06620--1e+0At4g14860atofp11 (Arabidopsis thaliana ovate family protein 11)O.I.H.G.S.X.
0.2532.6GmaAffx.34234.1.A1_atAt1g06620--3e+0At3g23727SCRL12 (SCR-Like 12)O.I.H.G.S.X.
0.2430.9Gma.16753.2.S1_a_atAt1g06620--4e-4At1g11750CLPP6O.I.H.G.S.X.
0.2430.9GmaAffx.91256.1.S1_atAt1g06620--6e-9At4g02510TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)O.I.H.G.S.X.
0.2228.1GmaAffx.61778.1.S1_atAt1g06620--5e+0At2g27250CLV3 (CLAVATA3)O.I.H.G.S.X.
0.1822.3Gma.6025.1.S1_atAt1g06620--2e-1At1g49560myb family transcription factorO.I.H.G.S.X.
0.1721.2Gma.6061.1.S1_s_atAt1g06620--1e+0At4g32915-O.I.H.G.S.X.
0.1417.5Gma.7497.1.S1_a_atAt1g06620OAS-TL4 cysteine synthase-7e-60At2g43750OASB (O-ACETYLSERINE (THIOL) LYASE B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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