Co-expression analysis

Gene ID PtpAffx.208714.1.S1_at
Gene name AP2/ERF domain-containing transcription factor
Homology with ArabidopsisSimilar to At3g23240: ERF1 (ETHYLENE RESPONSE FACTOR 1) (HF=6e-9)
Module size 15 genes
NF 0.50
%ile 80.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6991.50.90PtpAffx.208714.1.S1_atpmrna17280AP2/ERF domain-containing transcription factor-6e-9At3g23240ERF1 (ETHYLENE RESPONSE FACTOR 1)O.I.H.G.S.X.
0.6791.10.94PtpAffx.213748.1.S1_atpmrna26838hypothetical protein-8e-3At1g73000-O.I.H.G.S.X.
0.5984.90.93PtpAffx.223108.1.S1_atpmrna40930hypothetical protein-2e-1At1g66460protein kinase family proteinO.I.H.G.S.X.
0.5884.20.93PtpAffx.213392.1.S1_atpmrna26200hypothetical protein-3e-11At3g52400SYP122 (SYNTAXIN OF PLANTS 122)O.I.H.G.S.X.
0.5884.20.93PtpAffx.34391.1.S1_atBU823985hypothetical protein-3e-22At4g25970PSD3 (phosphatidylserine decarboxylase 3)O.I.H.G.S.X.
0.5279.40.93PtpAffx.209332.1.S1_atpmrna18462hypothetical protein-4e+0At4g33980unknown proteinO.I.H.G.S.X.
0.5078.60.94PtpAffx.94220.1.A1_atCX179354hypothetical protein-6e-13At2g42010PLDBETA1 (PHOSPHOLIPASE D BETA 1)O.I.H.G.S.X.
0.4774.60.93PtpAffx.151801.1.A1_atCV243964hypothetical protein-2e+0At5g35580ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.4774.60.92PtpAffx.201939.1.S1_s_atpmrna3866hypothetical protein-2e-1At5g14440-O.I.H.G.S.X.
0.4471.90.92PtpAffx.214127.1.S1_s_atpmrna27497hypothetical protein-3e+0At5g53270seed maturation family proteinO.I.H.G.S.X.
0.4369.70.92PtpAffx.204500.1.S1_atpmrna8828lysine/histidine transporter-2e-7At1g47670amino acid transporter family proteinO.I.H.G.S.X.
0.4268.60.92PtpAffx.209542.1.S1_x_atpmrna18907hypothetical protein-5e-1At2g32200unknown proteinO.I.H.G.S.X.
0.4268.60.93PtpAffx.14707.1.A1_atDN488236hypothetical protein-6e-7At3g53780rhomboid family proteinO.I.H.G.S.X.
0.3863.70.91PtpAffx.224981.1.S1_atpmrna43942hypothetical protein-6e-4At5g38250serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.3458.30.92PtpAffx.224383.1.S1_s_atpmrna42862hypothetical protein-1e-5At5g08350GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.898.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.497.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.987.2GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.583.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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