Co-expression analysis

Gene ID	PtpAffx.208589.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g65640: bHLH093 (beta HLH protein 93) (HF=3e-1)
Module size	6 genes
NF	0.24
%ile	44.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	0.92	PtpAffx.208589.1.S1_at	pmrna17046	hypothetical protein	-	3e-1	At5g65640	bHLH093 (beta HLH protein 93)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.93	PtpAffx.107147.1.S1_at	CX174000	hypothetical protein	-	3e-2	At3g52240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.208001.1.S1_at	pmrna15880	hypothetical protein	-	1e-11	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.93	PtpAffx.1634.3.A1_at	BP933609	hypothetical protein	-	3e-1	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	PtpAffx.3736.1.S1_at	CV250453	hypothetical protein	-	2e-4	At5g63140	ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.214496.1.S1_at	pmrna28186	hypothetical protein	-	8e-45	At5g35160	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7	85.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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