Co-expression analysis

Gene ID	PtpAffx.208369.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g76680: OPR1 (HF=3e-15)
Module size	6 genes
NF	0.85
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.208369.1.S1_at	pmrna16643	hypothetical protein	-	3e-15	At1g76680	OPR1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.91	99.2	0.96	PtpAffx.216720.1.S1_s_at	pmrna31684	hypothetical protein	-	1e-14	At1g76690	OPR2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.96	PtpAffx.63940.1.S1_s_at	CV273881	hypothetical protein	-	2e+0	At4g30450	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.97	PtpAffx.224631.1.S1_s_at	pmrna43355	hypothetical protein	-	2e-11	At3g09270	ATGSTU8 (GLUTATHIONE S-TRANSFERASE TAU 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	PtpAffx.5004.1.S1_at	CV265959	-	-	4e-1	At3g57910	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	Ptp.3810.1.S1_at	CV253278	hypothetical protein	-	4e-17	At1g78780	pathogenesis-related family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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