Co-expression analysis

Gene ID	PtpAffx.208361.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g06170: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=9e-28)
Module size	6 genes
NF	0.43
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.208361.1.S1_at	pmrna16628	hypothetical protein	-	9e-28	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.95	PtpAffx.4470.2.S1_at	CV242638	hypothetical protein	-	3e-2	At4g24210	SLY1 (SLEEPY1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.223135.1.S1_at	pmrna40985	hypothetical protein	-	1e-18	At2g17470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.96	PtpAffx.12794.1.S1_a_at	BU893547	hypothetical protein	-	8e-28	At3g63310	glutamate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.96	PtpAffx.125801.1.A1_s_at	BP930539	hypothetical protein	-	6e-6	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.96	PtpAffx.120820.1.A1_at	CV262630	-	-	4e-1	At5g45920	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	97.6	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.8	86.4	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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