Co-expression analysis

Gene ID	PtpAffx.208282.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g15100: RHA2A (HF=4e-1)
Module size	6 genes
NF	0.03
%ile	6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.86	PtpAffx.208282.1.S1_at	pmrna16473	hypothetical protein	-	4e-1	At1g15100	RHA2A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	Ptp.4056.1.S1_at	DN484701	hypothetical protein	-	4e-30	At2g26470	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.93	Ptp.6903.1.S1_at	DN484668	hypothetical protein	-	7e+0	Atmg00750	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.93	PtpAffx.162631.1.S1_at	CF233360	hypothetical protein	-	3e-21	At3g07370	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.92	PtpAffx.23392.1.S1_at	CV276934	hypothetical protein	-	5e-18	At2g29580	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.88	PtpAffx.213395.1.S1_at	pmrna26207	hypothetical protein	-	1e-24	At3g05680	EMB2016 (embryo defective 2016)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.9	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.0	97.5	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.5	90.9	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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