Co-expression analysis

Gene ID	PtpAffx.208227.1.S1_at
Gene name	ammonium transporter
Homology with Arabidopsis	Similar to At1g64780: ATAMT1 (HF=2e-20)
Module size	7 genes
NF	0.02
%ile	4.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	0.85	PtpAffx.208227.1.S1_at	pmrna16371	ammonium transporter	-	2e-20	At1g64780	ATAMT1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.88	PtpAffx.143501.1.S1_at	BU883274	hypothetical protein	-	1e+0	At2g31380	STH	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.86	PtpAffx.5765.1.A1_at	CV244528	hypothetical protein	-	2e-13	At1g55140	RNA binding / ribonuclease III	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.88	PtpAffx.26424.2.S1_a_at	CK097746	hypothetical protein	-	2e-4	At1g22690	gibberellin-responsive protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.88	PtpAffx.903.2.S1_a_at	DN487155	hypothetical protein	-	8e-6	At1g04290	thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	0.85	PtpAffx.152922.1.A1_at	CV278271	-	-	1e+0	At3g26870	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.85	PtpAffx.62182.1.S1_a_at	CV261082	hypothetical protein	-	3e-2	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.5	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328565	Populus x canescens root hypoxia_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1610744_at, orthologous to the query gene, PtpAffx.208227.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	1610744_at	At1g64780	hypothetical protein LOC100258016	-	1e+0	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.35	48.5	1613588_at	At1g64780	-	-	6e-175	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.32	43.1	1622423_at	At1g64780	similar to Bifunctional nitrilase/nitrile hydratase NIT4B	-	1e-13	At5g22300	NIT4 (NITRILASE 4)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1614796_at	At1g64780	hypothetical protein LOC100250729	-	4e-19	At1g42960	-	O.I.	H.G.	S.X.	Please select
0.31	41.3	1613635_at	At1g64780	hypothetical protein LOC100242641	-	2e-1	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1614624_at	At1g64780	hypothetical protein LOC100253628	-	1e+0	At5g61110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.30	39.4	1607413_at	At1g64780	hypothetical protein LOC100264560	-	2e-25	At3g52950	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1615857_s_at	At1g64780	hypothetical protein LOC100267827	-	2e-53	At1g01820	PEX11C (PEROXIN 11C)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1615820_at	At1g64780	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.	Please select
0.25	30.5	1610886_at	At1g64780	hypothetical protein LOC100251804	-	4e+0	At5g11412	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.24	28.7	1607332_at	At1g64780	hypothetical protein LOC100265577	-	6e-81	At3g47060	ftsh7 (FtsH protease 7)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1606926_at	At1g64780	hypothetical protein LOC100249085	-	1e-1	At4g32915	-	O.I.	H.G.	S.X.	Please select
0.24	28.7	1608792_s_at	At1g64780	hypothetical protein LOC100250896	-	2e-138	At5g50920	CLPC1	O.I.	H.G.	S.X.	Please select
0.24	28.7	1621619_at	At1g64780	hypothetical protein LOC100255167	-	3e-10	At4g00490	BAM2 (BETA-AMYLASE 2)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1620564_at	At1g64780	-	-	1e-21	At5g01820	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1616345_at	At1g64780	hypothetical protein LOC100241649	-	1e-9	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1610039_s_at	At1g64780	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	1609481_at	At1g64780	-	-	4e-45	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1612742_s_at	At1g64780	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.20	22.4	1613124_s_at	At1g64780	similar to putative polyubiquitin (UBQ10)	-	5e-14	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1612831_s_at	At1g64780	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.20	22.4	1607584_at	At1g64780	-	-	4e+0	At2g23148	-	O.I.	H.G.	S.X.	Please select
0.19	20.9	1607659_at	At1g64780	hypothetical protein LOC100255634	-	9e-25	At1g55340	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1616688_s_at	At1g64780	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	1615077_at	At1g64780	hypothetical protein LOC100264786	-	7e-6	At1g03290	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1619846_at	At1g64780	hypothetical protein LOC100247893	-	3e-11	At2g39140	SVR1 (SUPPRESSOR OF VARIEGATION 1)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1611783_at	At1g64780	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	1616189_at	At1g64780	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1615369_at	At1g64780	hypothetical protein LOC100244035	-	1e+0	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1609912_at	At1g64780	hypothetical protein LOC100249144	-	5e+0	At2g44820	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1606647_at	At1g64780	hypothetical protein LOC100264779	-	6e-26	At4g14780	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	1616449_at	At1g64780	hypothetical protein LOC100247509	-	3e-1	At2g36295	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1617022_at	At1g64780	hypothetical protein LOC100265005	-	6e+0	At3g52300	ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1615266_at	At1g64780	hypothetical protein LOC100246796	-	1e-14	At5g24930	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	1610454_s_at	At1g64780	hypothetical protein LOC100245034	-	1e-47	At5g62740	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	1607427_at	At1g64780	hypothetical protein LOC100253432	-	1e-5	At4g00700	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1622461_at	At1g64780	hypothetical protein LOC100265048	-	3e-28	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	1614413_at	At1g64780	hypothetical protein LOC100242392	-	9e-9	At5g24810	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	1612141_at	At1g64780	hypothetical protein LOC100251659	-	1e-16	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1621952_at	At1g64780	hypothetical protein LOC100259489	-	3e-54	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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