Co-expression analysis

Gene ID PtpAffx.208227.1.S1_at
Gene name ammonium transporter
Homology with ArabidopsisSimilar to At1g64780: ATAMT1 (HF=2e-20)
Module size 7 genes
NF 0.02
%ile 4.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7594.10.85PtpAffx.208227.1.S1_atpmrna16371ammonium transporter-2e-20At1g64780ATAMT1O.I.H.G.S.X.
0.1423.50.88PtpAffx.143501.1.S1_atBU883274hypothetical protein-1e+0At2g31380STHO.I.H.G.S.X.
0.035.20.86PtpAffx.5765.1.A1_atCV244528hypothetical protein-2e-13At1g55140RNA binding / ribonuclease IIIO.I.H.G.S.X.
0.023.60.88PtpAffx.26424.2.S1_a_atCK097746hypothetical protein-2e-4At1g22690gibberellin-responsive protein, putativeO.I.H.G.S.X.
0.023.60.88PtpAffx.903.2.S1_a_atDN487155hypothetical protein-8e-6At1g04290thioesterase family proteinO.I.H.G.S.X.
0.023.60.85PtpAffx.152922.1.A1_atCV278271--1e+0At3g26870self-incompatibility protein-relatedO.I.H.G.S.X.
0.012.20.85PtpAffx.62182.1.S1_a_atCV261082hypothetical protein-3e-2At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610744_at, orthologous to the query gene, PtpAffx.208227.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9599.61610744_atAt1g64780hypothetical protein LOC100258016-1e+0At2g47170ARF1A1CO.I.H.G.S.X.
0.3548.51613588_atAt1g64780--6e-175Atcg00730-O.I.H.G.S.X.
0.3243.11622423_atAt1g64780similar to Bifunctional nitrilase/nitrile hydratase NIT4B-1e-13At5g22300NIT4 (NITRILASE 4)O.I.H.G.S.X.
0.3243.11614796_atAt1g64780hypothetical protein LOC100250729-4e-19At1g42960-O.I.H.G.S.X.
0.3141.31613635_atAt1g64780hypothetical protein LOC100242641-2e-1At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.3141.31614624_atAt1g64780hypothetical protein LOC100253628-1e+0At5g61110protein binding / zinc ion bindingO.I.H.G.S.X.
0.3039.41607413_atAt1g64780hypothetical protein LOC100264560-2e-25At3g52950CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing proteinO.I.H.G.S.X.
0.2937.71615857_s_atAt1g64780hypothetical protein LOC100267827-2e-53At1g01820PEX11C (PEROXIN 11C)O.I.H.G.S.X.
0.2632.01615820_atAt1g64780hypothetical protein LOC100263593-1e-6At3g07270GTP cyclohydrolase IO.I.H.G.S.X.
0.2530.51610886_atAt1g64780hypothetical protein LOC100251804-4e+0At5g11412nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.2428.71607332_atAt1g64780hypothetical protein LOC100265577-6e-81At3g47060ftsh7 (FtsH protease 7)O.I.H.G.S.X.
0.2428.71606926_atAt1g64780hypothetical protein LOC100249085-1e-1At4g32915-O.I.H.G.S.X.
0.2428.71608792_s_atAt1g64780hypothetical protein LOC100250896-2e-138At5g50920CLPC1O.I.H.G.S.X.
0.2428.71621619_atAt1g64780hypothetical protein LOC100255167-3e-10At4g00490BAM2 (BETA-AMYLASE 2)O.I.H.G.S.X.
0.2327.51620564_atAt1g64780--1e-21At5g01820ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1)O.I.H.G.S.X.
0.2225.61616345_atAt1g64780hypothetical protein LOC100241649-1e-9At4g30810scpl29 (serine carboxypeptidase-like 29)O.I.H.G.S.X.
0.2124.01610039_s_atAt1g64780similar to NADH-plastoquinone oxidoreductase subunit K-0Atcg00480-O.I.H.G.S.X.
0.2124.01609481_atAt1g64780--4e-45At3g53580diaminopimelate epimerase family proteinO.I.H.G.S.X.
0.2124.01612742_s_atAt1g64780hypothetical protein LOC100260825-4e-3At1g51600TIFY2AO.I.H.G.S.X.
0.2022.41613124_s_atAt1g64780similar to putative polyubiquitin (UBQ10)-5e-14At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.2022.41612831_s_atAt1g64780H+-pyrophosphatase-5e-9At1g15690AVP1O.I.H.G.S.X.
0.2022.41607584_atAt1g64780--4e+0At2g23148-O.I.H.G.S.X.
0.1920.91607659_atAt1g64780hypothetical protein LOC100255634-9e-25At1g55340unknown proteinO.I.H.G.S.X.
0.1819.41616688_s_atAt1g64780--0Atcg01050-O.I.H.G.S.X.
0.1819.41615077_atAt1g64780hypothetical protein LOC100264786-7e-6At1g03290unknown proteinO.I.H.G.S.X.
0.1718.21619846_atAt1g64780hypothetical protein LOC100247893-3e-11At2g39140SVR1 (SUPPRESSOR OF VARIEGATION 1)O.I.H.G.S.X.
0.1616.71611783_atAt1g64780hypothetical protein LOC100262520-1e+0At2g43570chitinase, putativeO.I.H.G.S.X.
0.1515.61616189_atAt1g64780hypothetical protein LOC100260741-6e-18At1g75820CLV1 (CLAVATA 1)O.I.H.G.S.X.
0.1515.61615369_atAt1g64780hypothetical protein LOC100244035-1e+0At1g01800short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.1515.61609912_atAt1g64780hypothetical protein LOC100249144-5e+0At2g44820unknown proteinO.I.H.G.S.X.
0.1515.61606647_atAt1g64780hypothetical protein LOC100264779-6e-26At4g14780protein kinase, putativeO.I.H.G.S.X.
0.1414.41616449_atAt1g64780hypothetical protein LOC100247509-3e-1At2g36295unknown proteinO.I.H.G.S.X.
0.1313.31617022_atAt1g64780hypothetical protein LOC100265005-6e+0At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)O.I.H.G.S.X.
0.1313.31615266_atAt1g64780hypothetical protein LOC100246796-1e-14At5g24930zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.1212.11610454_s_atAt1g64780hypothetical protein LOC100245034-1e-47At5g62740band 7 family proteinO.I.H.G.S.X.
0.088.51607427_atAt1g64780hypothetical protein LOC100253432-1e-5At4g00700C2 domain-containing proteinO.I.H.G.S.X.
0.077.81622461_atAt1g64780hypothetical protein LOC100265048-3e-28At5g53570RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.066.81614413_atAt1g64780hypothetical protein LOC100242392-9e-9At5g24810ABC1 family proteinO.I.H.G.S.X.
0.066.81612141_atAt1g64780hypothetical protein LOC100251659-1e-16At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.045.21621952_atAt1g64780hypothetical protein LOC100259489-3e-54At5g20570RBX1 (RING-BOX 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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