Co-expression analysis

Gene ID PtpAffx.208227.1.S1_at
Gene name ammonium transporter
Homology with ArabidopsisSimilar to At1g64780: ATAMT1 (HF=2e-20)
Module size 7 genes
NF 0.02
%ile 4.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7594.10.85PtpAffx.208227.1.S1_atpmrna16371ammonium transporter-2e-20At1g64780ATAMT1O.I.H.G.S.X.
0.1423.50.88PtpAffx.143501.1.S1_atBU883274hypothetical protein-1e+0At2g31380STHO.I.H.G.S.X.
0.035.20.86PtpAffx.5765.1.A1_atCV244528hypothetical protein-2e-13At1g55140RNA binding / ribonuclease IIIO.I.H.G.S.X.
0.023.60.88PtpAffx.26424.2.S1_a_atCK097746hypothetical protein-2e-4At1g22690gibberellin-responsive protein, putativeO.I.H.G.S.X.
0.023.60.88PtpAffx.903.2.S1_a_atDN487155hypothetical protein-8e-6At1g04290thioesterase family proteinO.I.H.G.S.X.
0.023.60.85PtpAffx.152922.1.A1_atCV278271--1e+0At3g26870self-incompatibility protein-relatedO.I.H.G.S.X.
0.012.20.85PtpAffx.62182.1.S1_a_atCV261082hypothetical protein-3e-2At1g18170immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.5GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.894.9GSM328484Populus x canescens root hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM328532Populus x canescens root hypoxia_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g64780, orthologous to the query gene, PtpAffx.208227.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.2217.5At1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.O.I.H.G.S.X.
0.6075.7At2g27420817287cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.H.G.S.X.
0.3338.1At5g24120832477SIGE (SIGMA FACTOR E)Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.O.I.H.G.S.X.
0.2930.3At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.H.G.S.X.
0.168.8At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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