Co-expression analysis

Gene ID	PtpAffx.208173.1.S1_x_at
Gene name	autoinhibited calcium ATPase
Homology with Arabidopsis	Similar to At3g22910: calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) (HF=7e-55)
Module size	6 genes
NF	0.51
%ile	82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.88	PtpAffx.208173.1.S1_x_at	pmrna16258	autoinhibited calcium ATPase	-	7e-55	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.88	PtpAffx.208173.1.S1_at	pmrna16258	autoinhibited calcium ATPase	-	7e-55	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.224180.1.S1_at	pmrna42478	hypothetical protein	-	1e-4	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.88	PtpAffx.214387.1.S1_at	pmrna27998	hypothetical protein	-	7e-1	At4g16510	YbaK/prolyl-tRNA synthetase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	PtpAffx.208983.1.S1_s_at	pmrna17803	hypothetical protein	-	3e-2	At1g68765	IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.161922.1.A1_s_at	CK094074	autoinhibited calcium ATPase /// autoinhibited calcium ATPase	-	3e+0	At4g17453	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.17277.1.S1_at, orthologous to the query gene, PtpAffx.208173.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.17277.1.S1_at	At3g22910	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.17278.1.S1_at	At3g22910	-	-	3e-1	At4g25840	GPP1 (glycerol-3-phosphatase 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.17282.1.S1_at	At3g22910	-	-	1e+1	At5g32597	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.17280.1.S1_at	At3g22910	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.17276.1.S1_at	At3g22910	-	-	2e+0	At5g13290	CRN (CORYNE)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.9237.1.A1_at	At3g22910	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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