Co-expression analysis

Gene ID	PtpAffx.208173.1.S1_x_at
Gene name	autoinhibited calcium ATPase
Homology with Arabidopsis	Similar to At3g22910: calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) (HF=7e-55)
Module size	6 genes
NF	0.51
%ile	82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.88	PtpAffx.208173.1.S1_x_at	pmrna16258	autoinhibited calcium ATPase	-	7e-55	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.88	PtpAffx.208173.1.S1_at	pmrna16258	autoinhibited calcium ATPase	-	7e-55	At3g22910	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.88	PtpAffx.224180.1.S1_at	pmrna42478	hypothetical protein	-	1e-4	At5g13200	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.88	PtpAffx.214387.1.S1_at	pmrna27998	hypothetical protein	-	7e-1	At4g16510	YbaK/prolyl-tRNA synthetase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.91	PtpAffx.208983.1.S1_s_at	pmrna17803	hypothetical protein	-	3e-2	At1g68765	IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.88	PtpAffx.161922.1.A1_s_at	CK094074	autoinhibited calcium ATPase /// autoinhibited calcium ATPase	-	3e+0	At4g17453	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.3	98.2	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.2	95.6	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.5	94.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1616662_at, orthologous to the query gene, PtpAffx.208173.1.S1_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1616662_at	At3g22910	hypothetical protein LOC100254645	-	2e-34	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1608809_at	At3g22910	hypothetical protein LOC100267558	-	1e-1	At2g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1620306_at	At3g22910	hypothetical protein LOC100267760	-	3e-36	At1g75450	CKX5 (CYTOKININ OXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1615430_at	At3g22910	-	-	4e+0	At1g05930	DNA binding	O.I.	H.G.	S.X.	Please select
0.11	11.3	1608099_at	At3g22910	brassinosteroid-6-oxidase	-	5e-6	At3g30180	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1622454_at	At3g22910	hypothetical protein LOC100246221	-	2e-1	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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