Co-expression analysis

Gene ID PtpAffx.208173.1.S1_at
Gene name autoinhibited calcium ATPase
Homology with ArabidopsisSimilar to At3g22910: calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) (HF=7e-55)
Module size 6 genes
NF 0.51
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7393.60.88PtpAffx.208173.1.S1_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.9199.20.88PtpAffx.208173.1.S1_x_atpmrna16258autoinhibited calcium ATPase-7e-55At3g22910calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13)O.I.H.G.S.X.
0.6791.10.88PtpAffx.224180.1.S1_atpmrna42478hypothetical protein-1e-4At5g13200GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.3863.70.88PtpAffx.214387.1.S1_atpmrna27998hypothetical protein-7e-1At4g16510YbaK/prolyl-tRNA synthetase-relatedO.I.H.G.S.X.
0.3153.70.91PtpAffx.208983.1.S1_s_atpmrna17803hypothetical protein-3e-2At1g68765IDA (INFLORESCENCE DEFICIENT IN ABSCISSION)O.I.H.G.S.X.
0.2543.60.88PtpAffx.161922.1.A1_s_atCK094074autoinhibited calcium ATPase /// autoinhibited calcium ATPase-3e+0At4g17453unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.897.4GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.597.1GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.296.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.696.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.596.1GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.295.6GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.095.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
3.594.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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