CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.208057.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g15000: scpl50 (serine carboxypeptidase-like 50) (HF=5e-2)

Module size 6 genes

NF 0.17

%ile 32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 80.5 0.92 PtpAffx.208057.1.S1_at pmrna15992 hypothetical protein - 5e-2 At1g15000 scpl50 (serine carboxypeptidase-like 50) O.I. H.G. S.X.
0.44 71.9 0.94 PtpAffx.80513.1.S1_at CV277326 hypothetical protein - 5e-8 At3g51550 FER (FERONIA) O.I. H.G. S.X.
0.33 57.5 0.93 PtpAffx.212195.1.S1_at pmrna23908 hypothetical protein - 1e-33 At5g16810 ATP binding / protein kinase O.I. H.G. S.X.
0.17 29.1 0.92 PtpAffx.222709.1.S1_at pmrna40297 hypothetical protein - 2e-78 At3g04870 ZDS (ZETA-CAROTENE DESATURASE) O.I. H.G. S.X.
0.13 21.6 0.93 PtpAffx.57191.1.A1_at CV276610 hypothetical protein - 8e+0 At5g25020 unknown protein O.I. H.G. S.X.
0.05 8.3 0.92 Ptp.4653.1.S1_at CK116855 - - 2e-21 At4g04880 adenosine/AMP deaminase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 96.1 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6 94.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1612314_at, orthologous to the query gene, PtpAffx.208057.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 1612314_at At1g15000 hypothetical protein LOC100241649 - 3e-20 At4g30810 scpl29 (serine carboxypeptidase-like 29) O.I. H.G. S.X.
0.50 72.7 1622539_at At1g15000 hypothetical protein LOC100244218 - 7e-19 At4g03020 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.28 37.7 1621722_at At1g15000 hypothetical protein LOC100267520 - 8e-43 At1g53670 MSRB1 (methionine sulfoxide reductase B 1) O.I. H.G. S.X.
0.25 30.5 1615224_at At1g15000 hypothetical protein LOC100249178 - 1e-30 At2g25605 unknown protein O.I. H.G. S.X.
0.22 25.6 1620021_at At1g15000 hypothetical protein LOC100246037 - 4e-37 At1g48030 mtLPD1 (mitochondrial lipoamide dehydrogenase 1) O.I. H.G. S.X.
0.17 18.2 1621801_a_at At1g15000 hypothetical protein LOC100253136 - 2e-43 At1g49970 CLPR1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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