Co-expression analysis

Gene ID	PtpAffx.208057.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g15000: scpl50 (serine carboxypeptidase-like 50) (HF=5e-2)
Module size	6 genes
NF	0.17
%ile	32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.92	PtpAffx.208057.1.S1_at	pmrna15992	hypothetical protein	-	5e-2	At1g15000	scpl50 (serine carboxypeptidase-like 50)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.80513.1.S1_at	CV277326	hypothetical protein	-	5e-8	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.212195.1.S1_at	pmrna23908	hypothetical protein	-	1e-33	At5g16810	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.222709.1.S1_at	pmrna40297	hypothetical protein	-	2e-78	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.93	PtpAffx.57191.1.A1_at	CV276610	hypothetical protein	-	8e+0	At5g25020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.92	Ptp.4653.1.S1_at	CK116855	-	-	2e-21	At4g04880	adenosine/AMP deaminase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.112925.1.S1_at, orthologous to the query gene, PtpAffx.208057.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.112925.1.S1_at	At1g15000	-	-	2e-1	At1g13220	LINC2 (LITTLE NUCLEI2)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.2592.2.S1_s_at	At1g15000	-	-	6e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.28783.1.S1_x_at	At1g15000	single-stranded nucleic acid binding protein	-	5e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.1078.2.S1_a_at	At1g15000	Cyclophilin	-	8e-6	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.80013.1.S1_at	At1g15000	-	-	1e+0	At4g18335	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	TaAffx.113221.1.S1_at	At1g15000	-	-	1e-18	At1g03330	small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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