Co-expression analysis

Gene ID PtpAffx.208057.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g15000: scpl50 (serine carboxypeptidase-like 50) (HF=5e-2)
Module size 6 genes
NF 0.17
%ile 32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.92PtpAffx.208057.1.S1_atpmrna15992hypothetical protein-5e-2At1g15000scpl50 (serine carboxypeptidase-like 50)O.I.H.G.S.X.
0.4471.90.94PtpAffx.80513.1.S1_atCV277326hypothetical protein-5e-8At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3357.50.93PtpAffx.212195.1.S1_atpmrna23908hypothetical protein-1e-33At5g16810ATP binding / protein kinaseO.I.H.G.S.X.
0.1729.10.92PtpAffx.222709.1.S1_atpmrna40297hypothetical protein-2e-78At3g04870ZDS (ZETA-CAROTENE DESATURASE)O.I.H.G.S.X.
0.1321.60.93PtpAffx.57191.1.A1_atCV276610hypothetical protein-8e+0At5g25020unknown proteinO.I.H.G.S.X.
0.058.30.92Ptp.4653.1.S1_atCK116855--2e-21At4g04880adenosine/AMP deaminase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0479300, orthologous to the query gene, PtpAffx.208057.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os07g0479300At1g15000-Serine carboxypeptidase-like (EC 3.4.16.-)(Fragment)4e-6At3g10410scpl49 (serine carboxypeptidase-like 49)O.I.H.G.S.X.
0.6787.2Os09g0442300At1g15000-Oryzain gamma chain precursor (EC 3.4.22.-)4e-30At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.6181.2Os03g0307100At1g15000-TolB, C-terminal domain containing protein7e-37At2g47390serine-type endopeptidase/ serine-type peptidaseO.I.H.G.S.X.
0.6181.2Os05g0310500At1g15000-Cathepsin B (Fragment)1e-33At1g02300cathepsin B-like cysteine protease, putativeO.I.H.G.S.X.
0.4051.1Os08g0191000At1g15000-Auxin Efflux Carrier family protein2e-8At1g71090auxin efflux carrier family proteinO.I.H.G.S.X.
0.2831.1Os02g0469600At1g15000-Cysteine proteinase 1 precursor (EC 3.4.22.-)7e-11At4g16190cysteine proteinase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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