Co-expression analysis

Gene ID PtpAffx.208057.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g15000: scpl50 (serine carboxypeptidase-like 50) (HF=5e-2)
Module size 6 genes
NF 0.17
%ile 32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.92PtpAffx.208057.1.S1_atpmrna15992hypothetical protein-5e-2At1g15000scpl50 (serine carboxypeptidase-like 50)O.I.H.G.S.X.
0.4471.90.94PtpAffx.80513.1.S1_atCV277326hypothetical protein-5e-8At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3357.50.93PtpAffx.212195.1.S1_atpmrna23908hypothetical protein-1e-33At5g16810ATP binding / protein kinaseO.I.H.G.S.X.
0.1729.10.92PtpAffx.222709.1.S1_atpmrna40297hypothetical protein-2e-78At3g04870ZDS (ZETA-CAROTENE DESATURASE)O.I.H.G.S.X.
0.1321.60.93PtpAffx.57191.1.A1_atCV276610hypothetical protein-8e+0At5g25020unknown proteinO.I.H.G.S.X.
0.058.30.92Ptp.4653.1.S1_atCK116855--2e-21At4g04880adenosine/AMP deaminase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig10147_s_at, orthologous to the query gene, PtpAffx.208057.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5369.7Contig10147_s_atAt1g15000--1e+0At4g09950avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinO.I.H.G.S.X.
0.2528.9HVSMEm0008L21r2_atAt1g15000--5e+0At3g05020ACP1 (acyl carrier protein 1)O.I.H.G.S.X.
0.1412.9Contig9729_atAt1g15000--3e+0At3g56580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.064.8Contig10148_atAt1g15000--2e-22At5g65700BAM1 (BARELY ANY MERISTEM 1)O.I.H.G.S.X.
0.054.1Contig16785_atAt1g15000--1e+0At3g48330PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.054.1Contig21916_atAt1g15000--4e-1At2g42760unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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