Co-expression analysis

Gene ID	PtpAffx.208057.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g15000: scpl50 (serine carboxypeptidase-like 50) (HF=5e-2)
Module size	6 genes
NF	0.17
%ile	32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	0.92	PtpAffx.208057.1.S1_at	pmrna15992	hypothetical protein	-	5e-2	At1g15000	scpl50 (serine carboxypeptidase-like 50)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.94	PtpAffx.80513.1.S1_at	CV277326	hypothetical protein	-	5e-8	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.212195.1.S1_at	pmrna23908	hypothetical protein	-	1e-33	At5g16810	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.92	PtpAffx.222709.1.S1_at	pmrna40297	hypothetical protein	-	2e-78	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.93	PtpAffx.57191.1.A1_at	CV276610	hypothetical protein	-	8e+0	At5g25020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	0.92	Ptp.4653.1.S1_at	CK116855	-	-	2e-21	At4g04880	adenosine/AMP deaminase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.9	95.1	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.6	94.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.75545.1.S1_at, orthologous to the query gene, PtpAffx.208057.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	GmaAffx.75545.1.S1_at	At1g15000	-	-	4e+0	Atcg00580	-	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.76823.1.S1_at	At1g15000	-	-	4e-37	At5g64960	CDKC2 (Cyclin dependent kinase group C 2)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.5200.4.S1_at	At1g15000	-	-	2e-72	At3g08930	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.63282.1.S1_at	At1g15000	-	-	2e-10	At5g40490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.69087.1.S1_at	At1g15000	-	-	3e-22	At5g40490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.79160.1.S1_at	At1g15000	-	-	7e-8	At4g30600	signal recognition particle receptor alpha subunit family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.80044.1.S1_at	At1g15000	-	-	2e-1	At2g42130	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.5527.2.S1_at	At1g15000	-	-	3e-16	At5g62600	transportin-SR-related	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.16282.4.S1_a_at	At1g15000	-	-	1e-20	At1g43190	polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.29121.1.S1_at	At1g15000	-	-	1e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.93137.1.S1_at	At1g15000	-	-	6e-15	At5g49970	ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.2434.1.S1_a_at	At1g15000	-	-	4e-16	At3g02770	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	GmaAffx.70365.1.S1_at	At1g15000	-	-	5e-9	At3g22990	LFR (LEAF AND FLOWER RELATED)	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.84653.1.S1_at	At1g15000	-	-	2e-2	At5g01430	Got1-like family protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	GmaAffx.78964.1.S1_at	At1g15000	-	-	1e-3	At3g52660	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.4155.2.S1_s_at	At1g15000	EREBP/AP2 transcription factor	-	1e-2	At1g53887	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.83421.1.S1_at	At1g15000	-	-	4e-22	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.12982.2.S1_at	At1g15000	-	-	4e+0	At4g15710	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.61991.1.S1_at	At1g15000	-	-	5e-16	At4g13730	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	GmaAffx.68394.1.S1_at	At1g15000	-	-	3e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.7528.2.S1_at	At1g15000	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.5989.2.S1_a_at	At1g15000	-	-	2e-23	At2g17390	AKR2B (ANKYRIN REPEAT-CONTAINING 2B)	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.71902.1.S1_at	At1g15000	-	-	3e-1	At5g58680	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.1837.2.S1_at	At1g15000	-	-	1e-2	At1g34470	permease-related	O.I.	H.G.	S.X.	Please select
0.15	18.7	GmaAffx.88360.1.S1_at	At1g15000	-	-	1e-7	At1g71980	protease-associated zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	Gma.13580.2.S1_a_at	At1g15000	tubulin A	-	3e-139	At1g50010	TUA2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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