Co-expression analysis

Gene ID PtpAffx.208057.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g15000: scpl50 (serine carboxypeptidase-like 50) (HF=5e-2)
Module size 6 genes
NF 0.17
%ile 32.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5380.50.92PtpAffx.208057.1.S1_atpmrna15992hypothetical protein-5e-2At1g15000scpl50 (serine carboxypeptidase-like 50)O.I.H.G.S.X.
0.4471.90.94PtpAffx.80513.1.S1_atCV277326hypothetical protein-5e-8At3g51550FER (FERONIA)O.I.H.G.S.X.
0.3357.50.93PtpAffx.212195.1.S1_atpmrna23908hypothetical protein-1e-33At5g16810ATP binding / protein kinaseO.I.H.G.S.X.
0.1729.10.92PtpAffx.222709.1.S1_atpmrna40297hypothetical protein-2e-78At3g04870ZDS (ZETA-CAROTENE DESATURASE)O.I.H.G.S.X.
0.1321.60.93PtpAffx.57191.1.A1_atCV276610hypothetical protein-8e+0At5g25020unknown proteinO.I.H.G.S.X.
0.058.30.92Ptp.4653.1.S1_atCK116855--2e-21At4g04880adenosine/AMP deaminase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.694.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g15000, orthologous to the query gene, PtpAffx.208057.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g15000838065scpl50 (serine carboxypeptidase-like 50)F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOBO.I.H.G.S.X.
0.3541.6At3g17350820998unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3439.8At3g49430824105SRp34a (Ser/Arg-rich protein 34a)F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVAO.I.H.G.S.X.
0.3338.1At1g09660837494KH domain-containing quaking protein, putativeF:RNA binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.3235.7At2g16800816181high-affinity nickel-transport family proteinF:nickel ion transmembrane transporter activity, metal ion binding;P:nickel ion transport, metal ion transport;C:integral to membrane, chloroplast;OBPAO.I.H.G.S.X.
0.3133.8At2g27810817328xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.H.G.S.X.
0.3133.8At3g46740823827TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts.O.I.H.G.S.X.
0.3032.1At4g22140828303DNA binding / protein binding / zinc ion bindingF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2930.3At4g39120830067IMPL2 (MYO-INOSITOL MONOPHOSPHATASE LIKE 2)Encodes a myo-inositol monophosphatase IMPL2 (myo-Inositol monophosphatase like 2).O.I.H.G.S.X.
0.2930.3At1g43190840918polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MPOFO.I.H.G.S.X.
0.2930.3At2g39290818514PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1)Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria.O.I.H.G.S.X.
0.2830.3At5g43960834419nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MPFOBVAO.I.H.G.S.X.
0.2830.3At5g63440836463unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.2624.4At5g17070831570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.2624.4At1g34010840298unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.2522.6At1g51570841582C2 domain-containing proteinF:unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOFO.I.H.G.S.X.
0.2522.6At3g17970819660atToc64-III (Arabidopsis thaliana translocon at the outer membrane of chloroplasts 64-III)F:binding, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:unknown;C:chloroplast;BOMFPAO.I.H.G.S.X.
0.2522.6At5g09995830861unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.H.G.S.X.
0.2522.6At4g25550828660protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2420.7At5g11170830986ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:response to cadmium ion;C:nucleolus;BOMFPAVO.I.H.G.S.X.
0.2420.7At3g16480820896MPPalpha (mitochondrial processing peptidase alpha subunit)F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 8 components;BOMFPAVO.I.H.G.S.X.
0.2420.7At4g14000827036unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.2319.3At1g50575841479lysine decarboxylase family proteinF:carboxy-lyase activity;P:metabolic process;C:chloroplast;BOPFMAO.I.H.G.S.X.
0.2319.3At2g33410817905heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.2319.3At1g52370841667ribosomal protein L22 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.H.G.S.X.
0.2319.3At3g06140819787zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBAO.I.H.G.S.X.
0.2319.3At2g11910815665unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast envelope;BMOFPVAO.I.H.G.S.X.
0.2217.5At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPO.I.H.G.S.X.
0.2115.8At3g03220821224ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.H.G.S.X.
0.2014.4At3g10140820177RECA3 (recA homolog 3)F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA repair, SOS response, DNA recombination, DNA metabolic process;C:mitochondrion;BOAFMPVO.I.H.G.S.X.
0.2014.4At3g55000824665TON1A (TONNEAU 1)Encodes a protein of unknown function that is involved in cortical microtubule organization. Mutants exhibit abnormal cell growth and patterns of division. TON1A can functionally complement TON1B and their roles appear to be redundant in plants. Encodes a novel protein that is similar to human FOP and OFD1 centrosomal proteins. Localizes to the preprophase band, cytoplasm and cell cortex where it is probably associated with the cortical cytoskeleton. TON1A associates with plant centrins CEN1 and CEN2.O.I.H.G.S.X.
0.2014.4At1g04170839238EIF2 GAMMAprotein synthesis initiation factor eIF2 gammaO.I.H.G.S.X.
0.1912.7At1g49760841399PAB8 (POLY(A) BINDING PROTEIN 8)polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.O.I.H.G.S.X.
0.1912.7At3g57560824923aspartate/glutamate/uridylate kinase family proteinencodes a N-acetylglutamate kinase, involved in arginine biosynthesisO.I.H.G.S.X.
0.1912.7At5g04280830307glycine-rich RNA-binding proteinF:RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:nucleolus;MPFOBVAO.I.H.G.S.X.
0.1811.4At1g09760837505U2A' (U2 small nuclear ribonucleoprotein A)F:protein binding;P:nuclear mRNA splicing, via spliceosome, response to cold;C:in 6 components;MBOFPVO.I.H.G.S.X.
0.1710.2At1g09620837489ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide bindingF:nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding;P:leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast;BOMAFPO.I.H.G.S.X.
0.1710.2At3g33520823150ATARP6Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.O.I.H.G.S.X.
0.168.8At3g58470825016methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;MFPOO.I.H.G.S.X.
0.168.8At5g20130832135unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOBO.I.H.G.S.X.
0.157.8At1g07705837284transcription regulatorF:transcription regulator activity;P:regulation of transcription;C:nucleus, chloroplast;MOBFPVO.I.H.G.S.X.
0.157.8At1g18080838388ATARCAEncodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene.O.I.H.G.S.X.
0.146.8At3g14390820660diaminopimelate decarboxylase, putative / DAP carboxylase, putativeF:diaminopimelate decarboxylase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;BOMPFAVO.I.H.G.S.X.
0.146.8At3g58610825030ketol-acid reductoisomeraseF:coenzyme binding, oxidoreductase activity, binding, ketol-acid reductoisomerase activity, catalytic activity;P:response to cadmium ion, branched chain family amino acid biosynthetic process;C:in 6 components;BOFAPO.I.H.G.S.X.
0.146.8At2g14530815940unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFO.I.H.G.S.X.
0.135.8At5g57490835853VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4)Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.O.I.H.G.S.X.
0.135.8At2g44640819072-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope;POO.I.H.G.S.X.
0.135.8At5g24020832467MINDEncodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus. Its ATPase activity is stimulated by AtMinE1, a topological specificity factor.O.I.H.G.S.X.
0.135.8At1g61010842393CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I)F:protein binding;P:mRNA polyadenylation;C:mRNA cleavage and polyadenylation specificity factor complex, nucleus;BOMAFPVO.I.H.G.S.X.
0.114.1At3g48040823959ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling.O.I.H.G.S.X.
0.114.1At5g36230833620eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOVO.I.H.G.S.X.
0.103.4At5g16620831524TIC40chloroplast protein import (Tic40)O.I.H.G.S.X.
0.103.4At1g60660842360CB5LP (CYTOCHROME B5-LIKE PROTEIN)member of Cytochromes b5O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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