Co-expression analysis

Gene ID	PtpAffx.207997.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g43280: far-red impaired responsive family protein / FAR1 family protein (HF=3e-1)
Module size	8 genes
NF	0.10
%ile	20.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	0.91	PtpAffx.207997.1.S1_at	pmrna15871	hypothetical protein	-	3e-1	At2g43280	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.92	PtpAffx.51365.1.S1_at	CV268792	-	-	3e-14	At5g49810	MMT	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	PtpAffx.207998.1.S1_at	pmrna15872	hypothetical protein	-	5e-22	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.92	PtpAffx.201572.1.S1_s_at	pmrna3087	hypothetical protein	-	5e+0	Atcg01090	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.92	PtpAffx.157774.1.S1_at	BU834744	hypothetical protein	-	2e-2	At2g18730	diacylglycerol kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.93	PtpAffx.152677.1.S1_at	CX172956	-	-	6e-12	At5g53100	oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.93	PtpAffx.205265.1.S1_at	pmrna10442	hypothetical protein	-	2e-1	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.92	PtpAffx.8018.3.S1_s_at	BU898296	hypothetical protein	-	1e+0	At5g55000	FIP2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM372091	Clone3200_LPI2_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.8	86.4	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage