Co-expression analysis

Gene ID PtpAffx.207941.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g17060: pectinesterase family protein (HF=5e-1)
Module size 14 genes
NF 0.69
%ile 95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8196.11.00PtpAffx.207941.1.S1_atpmrna15760hypothetical protein-5e-1At3g17060pectinesterase family proteinO.I.H.G.S.X.
0.8096.01.00PtpAffx.224620.1.S1_atpmrna43330hypothetical protein-2e-1At2g43860polygalacturonase, putative / pectinase, putativeO.I.H.G.S.X.
0.8096.01.00PtpAffx.206504.1.S1_atpmrna12903hypothetical protein-7e-5At5g58170SVL5 (SHV3-LIKE 5)O.I.H.G.S.X.
0.7794.91.00PtpAffx.224620.1.S1_s_atpmrna43330hypothetical protein-2e-1At2g43860polygalacturonase, putative / pectinase, putativeO.I.H.G.S.X.
0.7393.61.00PtpAffx.200884.1.S1_atpmrna1732hypothetical protein-1e+0At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.7393.61.00PtpAffx.224255.1.S1_s_atpmrna42645hypothetical protein-5e-1At2g15450glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.7393.61.00PtpAffx.206633.1.S1_atpmrna13167hypothetical protein-2e-10At3g43860AtGH9A4 (Arabidopsis thaliana Glycosyl Hydrolase 9A4)O.I.H.G.S.X.
0.6991.51.00PtpAffx.215732.1.S1_atpmrna30090hypothetical protein-2e-7At3g01270pectate lyase family proteinO.I.H.G.S.X.
0.6588.61.00PtpAffx.210223.1.S1_atpmrna20134hypothetical protein-9e-2At2g34850MEE25 (maternal effect embryo arrest 25)O.I.H.G.S.X.
0.6187.01.00PtpAffx.101641.1.A1_atCV258037hypothetical protein-6e-19At3g22510unknown proteinO.I.H.G.S.X.
0.6187.01.00PtpAffx.210640.1.S1_x_atpmrna20869hypothetical protein-6e-1At3g55672-O.I.H.G.S.X.
0.5784.21.00PtpAffx.210223.1.S1_x_atpmrna20134hypothetical protein-9e-2At2g34850MEE25 (maternal effect embryo arrest 25)O.I.H.G.S.X.
0.5582.21.00PtpAffx.208159.1.S1_s_atpmrna16225hypothetical protein-2e+0At1g35210unknown proteinO.I.H.G.S.X.
0.4975.71.00PtpAffx.211712.1.S1_atpmrna22953hypothetical protein-3e+0At1g35420dienelactone hydrolase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.999.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
10.699.0GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
8.098.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.898.0GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.097.5GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.396.9GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.279.6GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.178.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.076.2GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage