Co-expression analysis

Gene ID PtpAffx.207913.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g15230: PDR2 (PLEIOTROPIC DRUG RESISTANCE 2) (HF=7e-16)
Module size 6 genes
NF 0.21
%ile 39.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6187.00.87PtpAffx.207913.1.S1_atpmrna15704hypothetical protein-7e-16At4g15230PDR2 (PLEIOTROPIC DRUG RESISTANCE 2)O.I.H.G.S.X.
0.4369.70.87PtpAffx.110114.1.A1_atCK091163--6e-3At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.3153.70.90PtpAffx.40862.1.S1_atBU834664--7e-2At1g27300unknown proteinO.I.H.G.S.X.
0.1729.10.87PtpAffx.30321.1.A1_atCV282051--2e+0At3g29020MYB110 (myb domain protein 110)O.I.H.G.S.X.
0.1525.30.87PtpAffx.80529.1.A1_atBP936518--1e-3At5g18190protein kinase family proteinO.I.H.G.S.X.
0.0812.90.88Ptp.1391.2.A1_atCK092019--1e+0At1g76870-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.697.9GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.892.1GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.389.8GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327358Populus balsamifera_20071015_Seedling_continuous_light_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM327359Populus balsamifera_20071015_Seedling_continuous_light_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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