Co-expression analysis

Gene ID	PtpAffx.207886.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g13890: SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) (HF=6e-26)
Module size	8 genes
NF	0.59
%ile	89.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	95.1	1.00	PtpAffx.207886.1.S1_at	pmrna15657	hypothetical protein	-	6e-26	At1g13890	SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	1.00	PtpAffx.215732.1.S1_at	pmrna30090	hypothetical protein	-	2e-7	At3g01270	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	1.00	PtpAffx.207941.1.S1_at	pmrna15760	hypothetical protein	-	5e-1	At3g17060	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	1.00	PtpAffx.210640.1.S1_x_at	pmrna20869	hypothetical protein	-	6e-1	At3g55672	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	1.00	PtpAffx.206504.1.S1_at	pmrna12903	hypothetical protein	-	7e-5	At5g58170	SVL5 (SHV3-LIKE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	1.00	PtpAffx.210223.1.S1_at	pmrna20134	hypothetical protein	-	9e-2	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	1.00	PtpAffx.203230.1.S1_s_at	pmrna6400	hypothetical protein	-	2e-5	At3g55770	LIM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	1.00	Ptp.3578.1.S1_at	DN492970	-	-	3e-5	At3g04690	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.5	98.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.2	97.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
5.8	97.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.1	96.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.6	84.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage