Co-expression analysis

Gene ID PtpAffx.207822.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g79320: AtMC6 (metacaspase 6) (HF=2e-32)
Module size 6 genes
NF 0.24
%ile 44.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.91PtpAffx.207822.1.S1_atpmrna15542hypothetical protein-2e-32At1g79320AtMC6 (metacaspase 6)O.I.H.G.S.X.
0.6791.10.94Ptp.6470.1.S1_atBP933188hypothetical protein-2e-35At1g65960GAD2 (GLUTAMATE DECARBOXYLASE 2)O.I.H.G.S.X.
0.4067.00.94Ptp.6372.2.A1_atCK091974calcium dependent protein kinase 10 /// calcium dependent protein kinase 28-2e-5At1g18890ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1)O.I.H.G.S.X.
0.2747.10.89Ptp.6484.1.S1_s_atCK319716caffeic acid 3-O-methyltransferase-8e-43At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.1626.90.94Ptp.2054.1.S1_s_atAF217958.1cinnamoyl CoA reductase-3e-18At1g15950CCR1 (CINNAMOYL COA REDUCTASE 1)O.I.H.G.S.X.
0.0711.60.94PtpAffx.48824.1.S1_atCV231300hypothetical protein-2e-13At5g59410-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.193.2GSM327402Populus balsamifera_20071015_Etiolated_seedling_6d_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327400Populus balsamifera_20071015_Etiolated_seedling_6d_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.389.8GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327403Populus balsamifera_20071015_Etiolated_seedling_6d_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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