Co-expression analysis

Gene ID	PtpAffx.207685.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g53580: aldo/keto reductase family protein (HF=4e-1)
Module size	11 genes
NF	0.20
%ile	37.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	91.5	0.87	PtpAffx.207685.1.S1_at	pmrna15255	hypothetical protein	-	4e-1	At5g53580	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.92	Ptp.7152.1.A1_at	DN488191	hypothetical protein	-	4e-2	At1g62530	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.93	PtpAffx.8674.4.S1_at	CV233756	hypothetical protein	-	5e-7	At2g33510	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.91	PtpAffx.13823.1.S1_a_at	CK095337	-	-	3e-1	At2g12190	cytochrome P450, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.93	Ptp.2625.1.S1_at	CK093627	hypothetical protein	-	7e+0	At1g19180	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.91	Ptp.488.1.A1_at	CK087424	hypothetical protein	-	2e-1	At1g28630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.91	PtpAffx.40865.1.S1_at	DN499476	hypothetical protein	-	3e-3	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.93	PtpAffx.8674.3.S1_at	CK096938	hypothetical protein	-	8e-8	At2g33510	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.16749.1.S1_s_at	BU810661	hypothetical protein	-	1e-20	At3g58510	DEAD box RNA helicase, putative (RH11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.91	PtpAffx.80314.1.A1_at	DN492817	-	-	5e+0	At5g43720	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.90	PtpAffx.223382.1.S1_at	pmrna41357	hypothetical protein	-	4e-25	At1g65380	CLV2 (clavata 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.2	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.7	85.5	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.6	84.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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