Co-expression analysis

Gene ID	PtpAffx.207684.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g39470: PPL2 (PsbP-like protein 2) (HF=4e-2)
Module size	6 genes
NF	0.01
%ile	1.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.43	69.7	0.70	PtpAffx.207684.1.S1_at	pmrna15254	hypothetical protein	-	4e-2	At2g39470	PPL2 (PsbP-like protein 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.75	PtpAffx.220249.1.S1_at	pmrna36611	hypothetical protein	-	1e+0	At4g38060	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.69	PtpAffx.225278.1.S1_at	pmrna44508	hypothetical protein	-	9e-3	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.69	PtpAffx.201125.1.S1_at	pmrna2213	hypothetical protein	-	1e+0	At3g18260	reticulon family protein (RTNLB9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.71	PtpAffx.202061.1.S1_at	pmrna4112	light-harvesting complex I protein Lhca5	-	8e-5	At1g45474	LHCA5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
-	0.4	0.69	PtpAffx.220656.1.S1_x_at	pmrna37066	-	-	8e+0	At5g28640	AN3 (ANGUSTIFOLIA 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	96.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.4	94.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.3	89.8	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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