Co-expression analysis

Gene ID PtpAffx.207660.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g39260: RNA binding / binding / protein binding (HF=8e-13)
Module size 6 genes
NF 0.05
%ile 11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.88PtpAffx.207660.1.S1_x_atpmrna15204hypothetical protein-8e-13At2g39260RNA binding / binding / protein bindingO.I.H.G.S.X.
0.2441.80.88PtpAffx.222153.1.S1_atpmrna39394hypothetical protein-3e-2Atmg00030-O.I.H.G.S.X.
0.1118.10.88PtpAffx.214521.1.S1_atpmrna28232hypothetical protein-3e-2At5g25340unknown proteinO.I.H.G.S.X.
0.058.30.88PtpAffx.202924.1.S1_atpmrna5786hypothetical protein-2e+0At3g10880unknown proteinO.I.H.G.S.X.
0.023.60.88PtpAffx.5452.3.A1_atCV281348--7e-24At2g19720rps15ab (ribosomal protein S15A B)O.I.H.G.S.X.
0.023.60.88Ptp.6615.1.S1_atDN489927hypothetical protein-3e-8At4g33925unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.60.91PtpAffx.134623.1.A1_atCV228876--2e+0At5g39870unknown proteinO.I.H.G.S.X.
0.4067.00.85PtpAffx.41964.1.S1_atCV274187--4e-1At2g02350SKIP3 (SKP1 INTERACTING PARTNER 3)O.I.H.G.S.X.
0.4067.00.85PtpAffx.7182.3.A1_a_atCV253214hypothetical protein-6e-3At1g79390unknown proteinO.I.H.G.S.X.
0.2950.50.83PtpAffx.216667.1.S1_atpmrna31604hypothetical protein-1e+0At4g14020rapid alkalinization factor (RALF) family proteinO.I.H.G.S.X.
0.2747.10.86PtpAffx.849.5.A1_atCV270817hypothetical protein-2e-42At3g2339060S ribosomal protein L36a/L44 (RPL36aA)O.I.H.G.S.X.
0.2747.10.86Ptp.6594.2.A1_atDN500236--2e-5At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.2747.10.87PtpAffx.1040.1.A1_atCV253539--6e-2At4g25510unknown proteinO.I.H.G.S.X.
0.2747.10.88PtpAffx.75358.1.A1_atCV273170--1e-1At5g60990DEAD/DEAH box helicase, putative (RH10)O.I.H.G.S.X.
0.2543.60.84PtpAffx.205280.1.S1_atpmrna10467hypothetical protein-2e-9At3g12890ASML2 (ACTIVATOR OF SPOMIN::LUC2)O.I.H.G.S.X.
0.2543.60.88PtpAffx.217155.1.S1_atpmrna32306hypothetical protein-2e+1At2g36030unknown proteinO.I.H.G.S.X.
0.2543.60.88PtpAffx.201114.1.S1_atpmrna2196hypothetical protein-3e-5At3g09950unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage