Co-expression analysis

Gene ID PtpAffx.207660.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g39260: RNA binding / binding / protein binding (HF=8e-13)
Module size 6 genes
NF 0.05
%ile 11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.88PtpAffx.207660.1.S1_x_atpmrna15204hypothetical protein-8e-13At2g39260RNA binding / binding / protein bindingO.I.H.G.S.X.
0.2441.80.88PtpAffx.222153.1.S1_atpmrna39394hypothetical protein-3e-2Atmg00030-O.I.H.G.S.X.
0.1118.10.88PtpAffx.214521.1.S1_atpmrna28232hypothetical protein-3e-2At5g25340unknown proteinO.I.H.G.S.X.
0.058.30.88PtpAffx.202924.1.S1_atpmrna5786hypothetical protein-2e+0At3g10880unknown proteinO.I.H.G.S.X.
0.023.60.88PtpAffx.5452.3.A1_atCV281348--7e-24At2g19720rps15ab (ribosomal protein S15A B)O.I.H.G.S.X.
0.023.60.88Ptp.6615.1.S1_atDN489927hypothetical protein-3e-8At4g33925unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1615967_at, orthologous to the query gene, PtpAffx.207660.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.91615967_atAt2g39260hypothetical protein LOC100266458-2e-5At5g67400peroxidase 73 (PER73) (P73) (PRXR11)O.I.H.G.S.X.
0.3650.71614326_s_atAt2g39260hypothetical protein LOC100255146-1e+0At4g04630unknown proteinO.I.H.G.S.X.
0.2734.01608624_atAt2g39260hypothetical protein LOC100250126-1e+0At3g28170unknown proteinO.I.H.G.S.X.
0.2530.51606557_atAt2g39260similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase-1e-9At4g33430BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)O.I.H.G.S.X.
0.2530.51617417_s_atAt2g39260hypothetical protein LOC100248713-2e-11At4g38520protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.2327.51617349_atAt2g39260hypothetical protein LOC100264419-4e-1Atmg01020-O.I.H.G.S.X.
0.2327.51606455_atAt2g39260hypothetical protein LOC100267689-1e-1At3g46930protein kinase family proteinO.I.H.G.S.X.
0.2225.61620455_atAt2g39260--3e-1At4g25434ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)O.I.H.G.S.X.
0.2225.61611253_atAt2g39260--2e-1At1g75060unknown proteinO.I.H.G.S.X.
0.2022.41621385_atAt2g39260--2e+0At4g04630unknown proteinO.I.H.G.S.X.
0.2022.41617152_atAt2g39260--9e-8At1g53710hydrolase/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.2022.41614867_atAt2g39260hypothetical protein LOC100263750-2e-9At3g17180scpl33 (serine carboxypeptidase-like 33)O.I.H.G.S.X.
0.2022.41607656_atAt2g39260hypothetical protein LOC100252782-2e+0At4g16210ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)O.I.H.G.S.X.
0.1920.91618013_atAt2g39260oligosaccharyl transferase STT3 protein-like-7e-77At5g19690STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)O.I.H.G.S.X.
0.1920.91618530_atAt2g39260--4e+0At5g15570-O.I.H.G.S.X.
0.1920.91612179_atAt2g39260similar to Os12g0438900-3e-7At2g22425peptidaseO.I.H.G.S.X.
0.1920.91608116_atAt2g39260--3e+0At4g08270-O.I.H.G.S.X.
0.1920.91618478_atAt2g39260hypothetical protein LOC100259390-4e-3At2g34850MEE25 (maternal effect embryo arrest 25)O.I.H.G.S.X.
0.1819.41618230_atAt2g39260hypothetical protein LOC100245789-2e+0At4g21090adrenodoxin-like ferredoxin 1O.I.H.G.S.X.
0.1819.41606987_atAt2g39260hypothetical protein LOC100260919-1e+0At2g31750UGT74D1 (UDP-glucosyl transferase 74D1)O.I.H.G.S.X.
0.1819.41613916_atAt2g39260hypothetical protein LOC100250922-1e-24At5g64410OPT4 (OLIGOPEPTIDE TRANSPORTER 4)O.I.H.G.S.X.
0.1718.21616870_atAt2g39260--2e+0At5g46490disease resistance protein (TIR-NBS class), putativeO.I.H.G.S.X.
0.1718.21609986_atAt2g39260hypothetical protein LOC100261396-6e-2At4g05130equilibrative nucleoside transporter, putative (ENT4)O.I.H.G.S.X.
0.1616.71612541_atAt2g39260--3e-20At1g01820PEX11C (PEROXIN 11C)O.I.H.G.S.X.
0.1515.61610660_atAt2g39260hypothetical LOC100263492-1e+0At2g20700unknown proteinO.I.H.G.S.X.
0.1414.41607681_atAt2g39260hypothetical protein LOC100257925-5e-28At5g43370APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)O.I.H.G.S.X.
0.1414.41616658_atAt2g39260--6e+0At5g01075beta-galactosidaseO.I.H.G.S.X.
0.1313.31617153_atAt2g39260hypothetical protein LOC100260369-2e+0At2g32360ubiquitin family proteinO.I.H.G.S.X.
0.1212.11614879_atAt2g39260hypothetical protein LOC100251822-6e-21At1g24440protein binding / zinc ion bindingO.I.H.G.S.X.
0.1212.11620923_atAt2g39260hypothetical protein LOC100241746-4e-1At1g32928unknown proteinO.I.H.G.S.X.
0.1010.31621983_s_atAt2g39260hypothetical protein LOC100245224-3e-1At4g27480glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.099.41608936_atAt2g39260hypothetical protein LOC100246361-1e-25At1g05805basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.099.41612839_atAt2g39260hypothetical protein LOC100252266-7e-1At4g32785-O.I.H.G.S.X.
0.088.51608695_s_atAt2g39260hypothetical protein LOC100255331-2e-16At2g45010unknown proteinO.I.H.G.S.X.
0.088.51607044_atAt2g39260hypothetical protein LOC100246065-1e-35At3g12160RABA4D (RAB GTPASE HOMOLOG A4D)O.I.H.G.S.X.
0.077.81611012_atAt2g39260hypothetical protein LOC100264980-4e-4At5g57580calmodulin-binding proteinO.I.H.G.S.X.
0.077.81618362_s_atAt2g39260hypothetical protein LOC100255189-2e-74At1g10670ACLA-1O.I.H.G.S.X.
0.066.81609392_s_atAt2g39260hypothetical protein LOC100242395-2e-47At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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