Co-expression analysis

Gene ID PtpAffx.207660.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g39260: RNA binding / binding / protein binding (HF=8e-13)
Module size 6 genes
NF 0.05
%ile 11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.88PtpAffx.207660.1.S1_x_atpmrna15204hypothetical protein-8e-13At2g39260RNA binding / binding / protein bindingO.I.H.G.S.X.
0.2441.80.88PtpAffx.222153.1.S1_atpmrna39394hypothetical protein-3e-2Atmg00030-O.I.H.G.S.X.
0.1118.10.88PtpAffx.214521.1.S1_atpmrna28232hypothetical protein-3e-2At5g25340unknown proteinO.I.H.G.S.X.
0.058.30.88PtpAffx.202924.1.S1_atpmrna5786hypothetical protein-2e+0At3g10880unknown proteinO.I.H.G.S.X.
0.023.60.88PtpAffx.5452.3.A1_atCV281348--7e-24At2g19720rps15ab (ribosomal protein S15A B)O.I.H.G.S.X.
0.023.60.88Ptp.6615.1.S1_atDN489927hypothetical protein-3e-8At4g33925unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.2GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.393.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.490.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os04g0491700, orthologous to the query gene, PtpAffx.207660.1.S1_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7391.1Os04g0491700At2g39260-General substrate transporter family protein4e-7At4g16480INT4 (INOSITOL TRANSPORTER 4)O.I.H.G.S.X.
0.6079.7Os04g0679900At2g39260-Conserved hypothetical protein4e-2At1g08970NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)O.I.H.G.S.X.
0.4458.1Os02g0137800At2g39260-Conserved hypothetical protein8e-2At1g33040NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)O.I.H.G.S.X.
0.4355.4Os06g0711100At2g39260-Hypothetical protein2e-2At1g67840CSK (CHLOROPLAST SENSOR KINASE)O.I.H.G.S.X.
0.3236.3Os02g0149800At2g39260-Protein phosphatase 2C family protein3e-28At4g31750WIN2 (HOPW1-1-INTERACTING 2)O.I.H.G.S.X.
0.1712.6Os03g0419100At2g39260-Conserved hypothetical protein2e-1At1g13740AFP2 (ABI FIVE BINDING PROTEIN 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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